reg-snw-81608

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.459	1.13e-08	7.59e-03	6.82e-03

chia-screen-data-Fav-reg-snw-81608 subnetwork

Genes (12)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
NDUFA4L2	56901	44	-2.477	2.459	21	-	Yes	-
EIF2S2	8894	40	-2.999	2.459	22	-	Yes	Yes
NCBP1	4686	41	-2.510	2.459	44	-	Yes	Yes
PHB	5245	82	-2.743	2.689	36	-	Yes	Yes
VARS	7407	60	-2.366	2.689	124	TF	Yes	-
CENPQ	55166	20	-2.137	2.459	16	-	Yes	-
CCT7	10574	40	-2.335	2.459	38	-	Yes	-
[ FIP1L1 ]	81608	2	-1.626	2.459	31	-	-	-
GPS1	2873	86	-3.621	2.689	36	TF	Yes	Yes
POLH	5429	36	-2.586	2.459	24	-	Yes	Yes
CLASP1	23332	10	-2.365	2.459	39	TF	Yes	-
FBXO22	26263	36	-1.739	2.459	208	TF	-	-

Interactions (12)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
VARS	7407	FBXO22	26263	pd	<>	reg.ITFP.txt: no annot
PHB	5245	VARS	7407	pd	<	reg.ITFP.txt: no annot
PHB	5245	FBXO22	26263	pd	<	reg.ITFP.txt: no annot
POLH	5429	FBXO22	26263	pd	<	reg.ITFP.txt: no annot
FBXO22	26263	FIP1L1	81608	pd	>	reg.ITFP.txt: no annot
FBXO22	26263	CENPQ	55166	pd	>	reg.ITFP.txt: no annot
NCBP1	4686	FBXO22	26263	pd	<	reg.ITFP.txt: no annot
CLASP1	23332	FIP1L1	81608	pd	>	reg.ITFP.txt: no annot
EIF2S2	8894	FBXO22	26263	pd	<	reg.ITFP.txt: no annot
FBXO22	26263	NDUFA4L2	56901	pd	>	reg.ITFP.txt: no annot
GPS1	2873	PHB	5245	pd	>	reg.ITFP.txt: no annot
CCT7	10574	FBXO22	26263	pd	<	reg.ITFP.txt: no annot

Related GO terms (142)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0004832	valine-tRNA ligase activity	1.23e-03	1.00e+00	9.668	1	1	1
GO:0031592	centrosomal corona	1.23e-03	1.00e+00	9.668	1	1	1
GO:0006438	valyl-tRNA aminoacylation	1.23e-03	1.00e+00	9.668	1	1	1
GO:0031111	negative regulation of microtubule polymerization or depolymerization	2.46e-03	1.00e+00	8.668	1	1	2
GO:0048742	regulation of skeletal muscle fiber development	2.46e-03	1.00e+00	8.668	1	1	2
GO:0030981	cortical microtubule cytoskeleton	2.46e-03	1.00e+00	8.668	1	1	2
GO:0005846	nuclear cap binding complex	2.46e-03	1.00e+00	8.668	1	1	2
GO:0002176	male germ cell proliferation	2.46e-03	1.00e+00	8.668	1	1	2
GO:0051294	establishment of spindle orientation	2.46e-03	1.00e+00	8.668	1	1	2
GO:0005850	eukaryotic translation initiation factor 2 complex	3.68e-03	1.00e+00	8.083	1	2	3
GO:0045292	mRNA cis splicing, via spliceosome	4.91e-03	1.00e+00	7.668	1	1	4
GO:0031442	positive regulation of mRNA 3'-end processing	4.91e-03	1.00e+00	7.668	1	1	4
GO:0006290	pyrimidine dimer repair	4.91e-03	1.00e+00	7.668	1	2	4
GO:0043515	kinetochore binding	4.91e-03	1.00e+00	7.668	1	2	4
GO:0010458	exit from mitosis	6.13e-03	1.00e+00	7.347	1	2	5
GO:0005828	kinetochore microtubule	6.13e-03	1.00e+00	7.347	1	1	5
GO:0006282	regulation of DNA repair	6.13e-03	1.00e+00	7.347	1	2	5
GO:2000323	negative regulation of glucocorticoid receptor signaling pathway	6.13e-03	1.00e+00	7.347	1	1	5
GO:0002161	aminoacyl-tRNA editing activity	6.13e-03	1.00e+00	7.347	1	1	5
GO:0031023	microtubule organizing center organization	6.13e-03	1.00e+00	7.347	1	1	5
GO:0005739	mitochondrion	6.57e-03	1.00e+00	2.304	4	32	659
GO:0050847	progesterone receptor signaling pathway	7.35e-03	1.00e+00	7.083	1	2	6
GO:0002199	zona pellucida receptor complex	8.57e-03	1.00e+00	6.861	1	4	7
GO:0000731	DNA synthesis involved in DNA repair	8.57e-03	1.00e+00	6.861	1	1	7
GO:0006301	postreplication repair	8.57e-03	1.00e+00	6.861	1	2	7
GO:0000339	RNA cap binding	8.57e-03	1.00e+00	6.861	1	1	7
GO:0005832	chaperonin-containing T-complex	8.57e-03	1.00e+00	6.861	1	4	7
GO:0005845	mRNA cap binding complex	9.79e-03	1.00e+00	6.668	1	1	8
GO:0006450	regulation of translational fidelity	9.79e-03	1.00e+00	6.668	1	1	8
GO:0010944	negative regulation of transcription by competitive promoter binding	9.79e-03	1.00e+00	6.668	1	1	8
GO:0010388	cullin deneddylation	9.79e-03	1.00e+00	6.668	1	4	8
GO:0034453	microtubule anchoring	1.10e-02	1.00e+00	6.499	1	1	9
GO:0010225	response to UV-C	1.10e-02	1.00e+00	6.499	1	2	9
GO:0006379	mRNA cleavage	1.10e-02	1.00e+00	6.499	1	2	9
GO:0071354	cellular response to interleukin-6	1.10e-02	1.00e+00	6.499	1	1	9
GO:2000060	positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process	1.10e-02	1.00e+00	6.499	1	2	9
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	1.10e-02	1.00e+00	6.499	1	3	9
GO:0005095	GTPase inhibitor activity	1.22e-02	1.00e+00	6.347	1	1	10
GO:0001578	microtubule bundle formation	1.22e-02	1.00e+00	6.347	1	2	10
GO:0005829	cytosol	1.26e-02	1.00e+00	1.450	6	88	1787
GO:0060766	negative regulation of androgen receptor signaling pathway	1.34e-02	1.00e+00	6.209	1	4	11
GO:0051010	microtubule plus-end binding	1.34e-02	1.00e+00	6.209	1	2	11
GO:0007026	negative regulation of microtubule depolymerization	1.34e-02	1.00e+00	6.209	1	2	11
GO:0007020	microtubule nucleation	1.34e-02	1.00e+00	6.209	1	1	11
GO:0008334	histone mRNA metabolic process	1.34e-02	1.00e+00	6.209	1	1	11
GO:0016575	histone deacetylation	1.71e-02	1.00e+00	5.861	1	2	14
GO:0005654	nucleoplasm	1.77e-02	1.00e+00	1.894	4	68	876
GO:0008135	translation factor activity, nucleic acid binding	1.83e-02	1.00e+00	5.762	1	4	15
GO:0000188	inactivation of MAPK activity	1.83e-02	1.00e+00	5.762	1	1	15
GO:0007339	binding of sperm to zona pellucida	1.83e-02	1.00e+00	5.762	1	4	15
GO:0003887	DNA-directed DNA polymerase activity	1.95e-02	1.00e+00	5.668	1	2	16
GO:0031047	gene silencing by RNA	2.19e-02	1.00e+00	5.499	1	2	18
GO:0007163	establishment or maintenance of cell polarity	2.43e-02	1.00e+00	5.347	1	1	20
GO:0006913	nucleocytoplasmic transport	2.43e-02	1.00e+00	5.347	1	2	20
GO:0034080	CENP-A containing nucleosome assembly	2.43e-02	1.00e+00	5.347	1	2	20
GO:0071897	DNA biosynthetic process	2.43e-02	1.00e+00	5.347	1	2	20
GO:0034660	ncRNA metabolic process	2.43e-02	1.00e+00	5.347	1	1	20
GO:0010467	gene expression	2.48e-02	1.00e+00	2.190	3	49	535
GO:0051084	'de novo' posttranslational protein folding	2.67e-02	1.00e+00	5.209	1	4	22
GO:0000387	spliceosomal snRNP assembly	2.67e-02	1.00e+00	5.209	1	1	22
GO:0005881	cytoplasmic microtubule	2.91e-02	1.00e+00	5.083	1	3	24
GO:0006370	7-methylguanosine mRNA capping	2.91e-02	1.00e+00	5.083	1	5	24
GO:0008180	COP9 signalosome	2.91e-02	1.00e+00	5.083	1	6	24
GO:0005876	spindle microtubule	2.91e-02	1.00e+00	5.083	1	4	24
GO:0009267	cellular response to starvation	3.15e-02	1.00e+00	4.968	1	1	26
GO:0006418	tRNA aminoacylation for protein translation	3.51e-02	1.00e+00	4.810	1	4	29
GO:0006446	regulation of translational initiation	3.51e-02	1.00e+00	4.810	1	2	29
GO:0003723	RNA binding	3.56e-02	1.00e+00	2.720	2	22	247
GO:0045111	intermediate filament cytoskeleton	3.75e-02	1.00e+00	4.714	1	3	31
GO:0007254	JNK cascade	4.10e-02	1.00e+00	4.581	1	1	34
GO:0050434	positive regulation of viral transcription	4.22e-02	1.00e+00	4.539	1	5	35
GO:0031124	mRNA 3'-end processing	4.22e-02	1.00e+00	4.539	1	4	35
GO:0044297	cell body	4.22e-02	1.00e+00	4.539	1	5	35
GO:0000226	microtubule cytoskeleton organization	4.34e-02	1.00e+00	4.499	1	1	36
GO:0003743	translation initiation factor activity	4.46e-02	1.00e+00	4.459	1	8	37
GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	4.57e-02	1.00e+00	4.421	1	4	38
GO:0006369	termination of RNA polymerase II transcription	4.57e-02	1.00e+00	4.421	1	5	38
GO:0000775	chromosome, centromeric region	4.93e-02	1.00e+00	4.311	1	6	41
GO:0003684	damaged DNA binding	4.93e-02	1.00e+00	4.311	1	1	41
GO:0006406	mRNA export from nucleus	5.28e-02	1.00e+00	4.209	1	7	44
GO:0000278	mitotic cell cycle	5.50e-02	1.00e+00	2.374	2	28	314
GO:0051301	cell division	5.86e-02	1.00e+00	4.054	1	2	49
GO:0006334	nucleosome assembly	6.09e-02	1.00e+00	3.996	1	4	51
GO:0006368	transcription elongation from RNA polymerase II promoter	6.21e-02	1.00e+00	3.968	1	8	52
GO:0000776	kinetochore	6.56e-02	1.00e+00	3.887	1	8	55
GO:0044267	cellular protein metabolic process	6.74e-02	1.00e+00	2.209	2	14	352
GO:0008584	male gonad development	6.79e-02	1.00e+00	3.836	1	1	57
GO:0000777	condensed chromosome kinetochore	6.79e-02	1.00e+00	3.836	1	6	57
GO:0044822	poly(A) RNA binding	6.88e-02	1.00e+00	1.611	3	45	799
GO:0042826	histone deacetylase binding	6.90e-02	1.00e+00	3.810	1	5	58
GO:0006464	cellular protein modification process	7.25e-02	1.00e+00	3.738	1	4	61
GO:0030018	Z disc	7.59e-02	1.00e+00	3.668	1	3	64
GO:0030308	negative regulation of cell growth	8.28e-02	1.00e+00	3.539	1	3	70
GO:0051082	unfolded protein binding	8.28e-02	1.00e+00	3.539	1	5	70
GO:0001649	osteoblast differentiation	8.73e-02	1.00e+00	3.459	1	5	74
GO:0005938	cell cortex	9.07e-02	1.00e+00	3.402	1	6	77
GO:0030529	ribonucleoprotein complex	9.63e-02	1.00e+00	3.311	1	5	82
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	9.85e-02	1.00e+00	3.276	1	5	84
GO:0000209	protein polyubiquitination	1.07e-01	1.00e+00	3.145	1	6	92
GO:0006511	ubiquitin-dependent protein catabolic process	1.07e-01	1.00e+00	3.145	1	6	92
GO:0006260	DNA replication	1.10e-01	1.00e+00	3.114	1	9	94
GO:0000086	G2/M transition of mitotic cell cycle	1.13e-01	1.00e+00	3.069	1	7	97
GO:0008017	microtubule binding	1.13e-01	1.00e+00	3.069	1	9	97
GO:0006457	protein folding	1.13e-01	1.00e+00	3.069	1	5	97
GO:0006413	translational initiation	1.15e-01	1.00e+00	3.039	1	6	99
GO:0006397	mRNA processing	1.27e-01	1.00e+00	2.887	1	12	110
GO:0042981	regulation of apoptotic process	1.29e-01	1.00e+00	2.861	1	4	112
GO:0007049	cell cycle	1.33e-01	1.00e+00	2.823	1	8	115
GO:0000398	mRNA splicing, via spliceosome	1.47e-01	1.00e+00	2.668	1	15	128
GO:0044212	transcription regulatory region DNA binding	1.62e-01	1.00e+00	2.509	1	13	143
GO:0001701	in utero embryonic development	1.74e-01	1.00e+00	2.402	1	7	154
GO:0005634	nucleus	1.76e-01	1.00e+00	0.589	6	158	3246
GO:0005730	nucleolus	1.81e-01	1.00e+00	1.004	3	74	1217
GO:0005874	microtubule	1.83e-01	1.00e+00	2.320	1	10	163
GO:0008380	RNA splicing	1.85e-01	1.00e+00	2.302	1	21	165
GO:0016071	mRNA metabolic process	1.90e-01	1.00e+00	2.259	1	10	170
GO:0006412	translation	1.98e-01	1.00e+00	2.193	1	12	178
GO:0004842	ubiquitin-protein transferase activity	1.99e-01	1.00e+00	2.185	1	17	179
GO:0005515	protein binding	2.00e-01	1.00e+00	0.466	7	198	4124
GO:0005737	cytoplasm	2.01e-01	1.00e+00	0.628	5	127	2633
GO:0016070	RNA metabolic process	2.08e-01	1.00e+00	2.114	1	10	188
GO:0005743	mitochondrial inner membrane	2.17e-01	1.00e+00	2.046	1	9	197
GO:0006281	DNA repair	2.23e-01	1.00e+00	2.003	1	24	203
GO:0019899	enzyme binding	2.30e-01	1.00e+00	1.954	1	7	210
GO:0005813	centrosome	2.36e-01	1.00e+00	1.907	1	10	217
GO:0007411	axon guidance	2.55e-01	1.00e+00	1.780	1	8	237
GO:0008285	negative regulation of cell proliferation	2.92e-01	1.00e+00	1.555	1	11	277
GO:0005524	ATP binding	3.01e-01	1.00e+00	0.868	2	37	892
GO:0046872	metal ion binding	3.21e-01	1.00e+00	0.801	2	24	934
GO:0070062	extracellular vesicular exosome	3.27e-01	1.00e+00	0.573	3	51	1641
GO:0045892	negative regulation of transcription, DNA-templated	3.27e-01	1.00e+00	1.360	1	17	317
GO:0006366	transcription from RNA polymerase II promoter	3.47e-01	1.00e+00	1.255	1	23	341
GO:0042802	identical protein binding	3.58e-01	1.00e+00	1.201	1	15	354
GO:0045893	positive regulation of transcription, DNA-templated	3.77e-01	1.00e+00	1.110	1	21	377
GO:0005794	Golgi apparatus	4.06e-01	1.00e+00	0.971	1	6	415
GO:0016032	viral process	4.16e-01	1.00e+00	0.927	1	30	428
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	4.37e-01	1.00e+00	0.836	1	29	456
GO:0016020	membrane	4.47e-01	1.00e+00	0.431	2	56	1207
GO:0005887	integral component of plasma membrane	5.17e-01	1.00e+00	0.501	1	8	575
GO:0007165	signal transduction	5.44e-01	1.00e+00	0.397	1	24	618
GO:0006355	regulation of transcription, DNA-templated	5.99e-01	1.00e+00	0.187	1	31	715
GO:0005886	plasma membrane	9.11e-01	1.00e+00	-1.132	1	46	1784

chia-Fav

reg-snw-81608

Statistics

Genes (12)

Interactions (12)

Related GO terms (142)