reg-snw-90480

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.431	1.64e-08	9.48e-03	8.30e-03

chia-screen-data-Fav-reg-snw-90480 subnetwork

Genes (8)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
[ GADD45GIP1 ]	90480	1	-1.092	2.431	6	-	-	-
VARS	7407	60	-2.366	2.689	124	TF	Yes	-
FBXL6	26233	28	-2.253	2.689	22	-	Yes	-
HNRNPU	3192	39	-2.869	2.644	33	-	Yes	-
GPS1	2873	86	-3.621	2.689	36	TF	Yes	Yes
PHB	5245	82	-2.743	2.689	36	-	Yes	Yes
POLR2E	5434	30	-2.037	2.644	201	TF	Yes	-
FTSJ1	24140	43	-2.463	2.689	35	-	Yes	Yes

Interactions (8)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
PHB	5245	VARS	7407	pd	<	reg.ITFP.txt: no annot
VARS	7407	FTSJ1	24140	pd	>	reg.ITFP.txt: no annot
POLR2E	5434	FTSJ1	24140	pd	>	reg.ITFP.txt: no annot
POLR2E	5434	VARS	7407	pd	<>	reg.ITFP.txt: no annot
VARS	7407	GADD45GIP1	90480	pd	>	reg.ITFP.txt: no annot
HNRNPU	3192	POLR2E	5434	pd	<	reg.ITFP.txt: no annot
VARS	7407	FBXL6	26233	pd	>	reg.ITFP.txt: no annot
GPS1	2873	PHB	5245	pd	>	reg.ITFP.txt: no annot

Related GO terms (82)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0004832	valine-tRNA ligase activity	8.19e-04	1.00e+00	10.253	1	1	1
GO:0002128	tRNA nucleoside ribose methylation	8.19e-04	1.00e+00	10.253	1	1	1
GO:0006438	valyl-tRNA aminoacylation	8.19e-04	1.00e+00	10.253	1	1	1
GO:0008175	tRNA methyltransferase activity	8.19e-04	1.00e+00	10.253	1	1	1
GO:0001649	osteoblast differentiation	1.54e-03	1.00e+00	5.044	2	5	74
GO:0007049	cell cycle	3.68e-03	1.00e+00	4.408	2	8	115
GO:2000323	negative regulation of glucocorticoid receptor signaling pathway	4.09e-03	1.00e+00	7.931	1	1	5
GO:0002161	aminoacyl-tRNA editing activity	4.09e-03	1.00e+00	7.931	1	1	5
GO:0070934	CRD-mediated mRNA stabilization	4.09e-03	1.00e+00	7.931	1	2	5
GO:0000398	mRNA splicing, via spliceosome	4.53e-03	1.00e+00	4.253	2	15	128
GO:0050847	progesterone receptor signaling pathway	4.91e-03	1.00e+00	7.668	1	2	6
GO:0002181	cytoplasmic translation	4.91e-03	1.00e+00	7.668	1	1	6
GO:0070937	CRD-mediated mRNA stability complex	4.91e-03	1.00e+00	7.668	1	2	6
GO:0001055	RNA polymerase II activity	4.91e-03	1.00e+00	7.668	1	3	6
GO:0010944	negative regulation of transcription by competitive promoter binding	6.54e-03	1.00e+00	7.253	1	1	8
GO:0010388	cullin deneddylation	6.54e-03	1.00e+00	7.253	1	4	8
GO:0006450	regulation of translational fidelity	6.54e-03	1.00e+00	7.253	1	1	8
GO:0071354	cellular response to interleukin-6	7.35e-03	1.00e+00	7.083	1	1	9
GO:0008380	RNA splicing	7.43e-03	1.00e+00	3.887	2	21	165
GO:0010467	gene expression	7.44e-03	1.00e+00	2.775	3	49	535
GO:0005736	DNA-directed RNA polymerase I complex	8.17e-03	1.00e+00	6.931	1	4	10
GO:0001054	RNA polymerase I activity	8.17e-03	1.00e+00	6.931	1	4	10
GO:0005095	GTPase inhibitor activity	8.17e-03	1.00e+00	6.931	1	1	10
GO:0060766	negative regulation of androgen receptor signaling pathway	8.98e-03	1.00e+00	6.794	1	4	11
GO:0005665	DNA-directed RNA polymerase II, core complex	1.06e-02	1.00e+00	6.553	1	3	13
GO:0001056	RNA polymerase III activity	1.06e-02	1.00e+00	6.553	1	3	13
GO:0005666	DNA-directed RNA polymerase III complex	1.06e-02	1.00e+00	6.553	1	3	13
GO:0006385	transcription elongation from RNA polymerase III promoter	1.14e-02	1.00e+00	6.446	1	3	14
GO:0006386	termination of RNA polymerase III transcription	1.14e-02	1.00e+00	6.446	1	3	14
GO:0016575	histone deacetylation	1.14e-02	1.00e+00	6.446	1	2	14
GO:0000188	inactivation of MAPK activity	1.22e-02	1.00e+00	6.347	1	1	15
GO:0005739	mitochondrion	1.33e-02	1.00e+00	2.474	3	32	659
GO:0003899	DNA-directed RNA polymerase activity	1.47e-02	1.00e+00	6.083	1	3	18
GO:0036464	cytoplasmic ribonucleoprotein granule	1.55e-02	1.00e+00	6.005	1	1	19
GO:0071897	DNA biosynthetic process	1.63e-02	1.00e+00	5.931	1	2	20
GO:0008180	COP9 signalosome	1.95e-02	1.00e+00	5.668	1	6	24
GO:0006370	7-methylguanosine mRNA capping	1.95e-02	1.00e+00	5.668	1	5	24
GO:0006360	transcription from RNA polymerase I promoter	2.19e-02	1.00e+00	5.499	1	4	27
GO:0006418	tRNA aminoacylation for protein translation	2.35e-02	1.00e+00	5.395	1	4	29
GO:0006383	transcription from RNA polymerase III promoter	2.35e-02	1.00e+00	5.395	1	6	29
GO:0007254	JNK cascade	2.75e-02	1.00e+00	5.166	1	1	34
GO:0050434	positive regulation of viral transcription	2.83e-02	1.00e+00	5.124	1	5	35
GO:0005654	nucleoplasm	2.86e-02	1.00e+00	2.064	3	68	876
GO:0006396	RNA processing	3.23e-02	1.00e+00	4.931	1	4	40
GO:0006283	transcription-coupled nucleotide-excision repair	3.23e-02	1.00e+00	4.931	1	6	40
GO:0032481	positive regulation of type I interferon production	3.87e-02	1.00e+00	4.668	1	3	48
GO:0006368	transcription elongation from RNA polymerase II promoter	4.18e-02	1.00e+00	4.553	1	8	52
GO:0006289	nucleotide-excision repair	4.26e-02	1.00e+00	4.525	1	6	53
GO:0016032	viral process	4.50e-02	1.00e+00	2.512	2	30	428
GO:0042826	histone deacetylase binding	4.66e-02	1.00e+00	4.395	1	5	58
GO:0071013	catalytic step 2 spliceosome	4.89e-02	1.00e+00	4.323	1	5	61
GO:0030308	negative regulation of cell growth	5.59e-02	1.00e+00	4.124	1	3	70
GO:0030529	ribonucleoprotein complex	6.53e-02	1.00e+00	3.896	1	5	82
GO:0005634	nucleus	8.69e-02	1.00e+00	0.911	5	158	3246
GO:0042981	regulation of apoptotic process	8.82e-02	1.00e+00	3.446	1	4	112
GO:0044212	transcription regulatory region DNA binding	1.11e-01	1.00e+00	3.094	1	13	143
GO:0006367	transcription initiation from RNA polymerase II promoter	1.25e-01	1.00e+00	2.922	1	18	161
GO:0004842	ubiquitin-protein transferase activity	1.38e-01	1.00e+00	2.770	1	17	179
GO:0016567	protein ubiquitination	1.44e-01	1.00e+00	2.699	1	14	188
GO:0005743	mitochondrial inner membrane	1.50e-01	1.00e+00	2.631	1	9	197
GO:0006281	DNA repair	1.55e-01	1.00e+00	2.588	1	24	203
GO:0019899	enzyme binding	1.60e-01	1.00e+00	2.539	1	7	210
GO:0005524	ATP binding	1.61e-01	1.00e+00	1.453	2	37	892
GO:0003677	DNA binding	1.78e-01	1.00e+00	1.366	2	52	947
GO:0003723	RNA binding	1.85e-01	1.00e+00	2.305	1	22	247
GO:0006508	proteolysis	1.97e-01	1.00e+00	2.209	1	11	264
GO:0008285	negative regulation of cell proliferation	2.06e-01	1.00e+00	2.140	1	11	277
GO:0005515	protein binding	2.10e-01	1.00e+00	0.566	5	198	4124
GO:0009986	cell surface	2.15e-01	1.00e+00	2.069	1	5	291
GO:0045892	negative regulation of transcription, DNA-templated	2.32e-01	1.00e+00	1.945	1	17	317
GO:0006366	transcription from RNA polymerase II promoter	2.48e-01	1.00e+00	1.840	1	23	341
GO:0016020	membrane	2.59e-01	1.00e+00	1.016	2	56	1207
GO:0045893	positive regulation of transcription, DNA-templated	2.70e-01	1.00e+00	1.695	1	21	377
GO:0045087	innate immune response	3.16e-01	1.00e+00	1.433	1	12	452
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	3.18e-01	1.00e+00	1.421	1	29	456
GO:0005737	cytoplasm	3.71e-01	1.00e+00	0.476	3	127	2633
GO:0005887	integral component of plasma membrane	3.85e-01	1.00e+00	1.086	1	8	575
GO:0007165	signal transduction	4.07e-01	1.00e+00	0.982	1	24	618
GO:0005829	cytosol	4.46e-01	1.00e+00	0.450	2	88	1787
GO:0006355	regulation of transcription, DNA-templated	4.56e-01	1.00e+00	0.772	1	31	715
GO:0044822	poly(A) RNA binding	4.95e-01	1.00e+00	0.611	1	45	799
GO:0070062	extracellular vesicular exosome	7.71e-01	1.00e+00	-0.427	1	51	1641

chia-Fav

reg-snw-90480

Statistics

Genes (8)

Interactions (8)

Related GO terms (82)