reg-snw-8888

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.326	6.24e-08	2.05e-02	1.65e-02

chia-screen-data-Fav-reg-snw-8888 subnetwork

Genes (13)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
FOXJ3	22887	15	-2.407	2.369	87	TF	Yes	Yes
APLP2	334	15	-2.732	2.389	4	-	Yes	Yes
[ MCM3AP ]	8888	2	-1.683	2.326	52	-	-	-
AHCTF1	25909	6	-2.069	2.326	31	TF	Yes	-
ZDHHC20	253832	9	-2.673	2.326	25	-	Yes	-
REXO1	57455	12	-2.303	2.369	130	TF	Yes	-
FTSJ1	24140	43	-2.463	2.689	35	-	Yes	Yes
POLR2E	5434	30	-2.037	2.644	201	TF	Yes	-
ENPP7	339221	10	-2.569	2.369	6	-	Yes	Yes
HNRNPU	3192	39	-2.869	2.644	33	-	Yes	-
CGGBP1	8545	5	-2.601	2.326	5	-	Yes	Yes
NCOA2	10499	4	-1.786	2.326	95	TF	-	-
SFPQ	6421	15	-2.051	2.389	142	TF	Yes	-

Interactions (14)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
POLR2E	5434	MCM3AP	8888	pd	>	reg.ITFP.txt: no annot
MCM3AP	8888	REXO1	57455	pd	<	reg.ITFP.txt: no annot
APLP2	334	SFPQ	6421	pd	<	reg.ITFP.txt: no annot
AHCTF1	25909	ZDHHC20	253832	pd	>	reg.ITFP.txt: no annot
MCM3AP	8888	FOXJ3	22887	pd	<	reg.ITFP.txt: no annot
SFPQ	6421	MCM3AP	8888	pd	>	reg.ITFP.txt: no annot
NCOA2	10499	AHCTF1	25909	pd	<>	reg.ITFP.txt: no annot
MCM3AP	8888	NCOA2	10499	pd	<	reg.ITFP.txt: no annot
POLR2E	5434	FTSJ1	24140	pd	>	reg.ITFP.txt: no annot
REXO1	57455	ENPP7	339221	pd	>	reg.ITFP.txt: no annot
FOXJ3	22887	REXO1	57455	pd	<>	reg.ITFP.txt: no annot
HNRNPU	3192	POLR2E	5434	pd	<	reg.ITFP.txt: no annot
CGGBP1	8545	AHCTF1	25909	pd	<	reg.ITFP.txt: no annot
MCM3AP	8888	AHCTF1	25909	pd	<	reg.ITFP.txt: no annot

Related GO terms (137)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0005654	nucleoplasm	5.06e-04	1.00e+00	2.363	6	68	876
GO:0008380	RNA splicing	1.20e-03	1.00e+00	3.772	3	21	165
GO:0002128	tRNA nucleoside ribose methylation	1.33e-03	1.00e+00	9.553	1	1	1
GO:0008175	tRNA methyltransferase activity	1.33e-03	1.00e+00	9.553	1	1	1
GO:0051028	mRNA transport	1.71e-03	1.00e+00	4.998	2	5	47
GO:0005643	nuclear pore	2.01e-03	1.00e+00	4.881	2	12	51
GO:0006684	sphingomyelin metabolic process	2.66e-03	1.00e+00	8.553	1	1	2
GO:0000785	chromatin	2.68e-03	1.00e+00	4.670	2	6	59
GO:0030375	thyroid hormone receptor coactivator activity	3.99e-03	1.00e+00	7.968	1	1	3
GO:1902177	positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway	3.99e-03	1.00e+00	7.968	1	1	3
GO:0046914	transition metal ion binding	3.99e-03	1.00e+00	7.968	1	1	3
GO:0004767	sphingomyelin phosphodiesterase activity	3.99e-03	1.00e+00	7.968	1	1	3
GO:0016363	nuclear matrix	4.08e-03	1.00e+00	4.363	2	10	73
GO:0007176	regulation of epidermal growth factor-activated receptor activity	5.32e-03	1.00e+00	7.553	1	1	4
GO:0003677	DNA binding	5.63e-03	1.00e+00	1.988	5	52	947
GO:0070934	CRD-mediated mRNA stabilization	6.64e-03	1.00e+00	7.231	1	2	5
GO:0042382	paraspeckles	6.64e-03	1.00e+00	7.231	1	3	5
GO:0002181	cytoplasmic translation	7.96e-03	1.00e+00	6.968	1	1	6
GO:0001055	RNA polymerase II activity	7.96e-03	1.00e+00	6.968	1	3	6
GO:0042754	negative regulation of circadian rhythm	7.96e-03	1.00e+00	6.968	1	2	6
GO:0070937	CRD-mediated mRNA stability complex	7.96e-03	1.00e+00	6.968	1	2	6
GO:0005634	nucleus	8.61e-03	1.00e+00	1.058	9	158	3246
GO:0007617	mating behavior	9.28e-03	1.00e+00	6.746	1	1	7
GO:0000380	alternative mRNA splicing, via spliceosome	9.28e-03	1.00e+00	6.746	1	2	7
GO:2000273	positive regulation of receptor activity	1.06e-02	1.00e+00	6.553	1	1	8
GO:0006878	cellular copper ion homeostasis	1.06e-02	1.00e+00	6.553	1	1	8
GO:0051292	nuclear pore complex assembly	1.06e-02	1.00e+00	6.553	1	4	8
GO:0031080	nuclear pore outer ring	1.19e-02	1.00e+00	6.383	1	2	9
GO:0000398	mRNA splicing, via spliceosome	1.21e-02	1.00e+00	3.553	2	15	128
GO:0001967	suckling behavior	1.32e-02	1.00e+00	6.231	1	4	10
GO:0005736	DNA-directed RNA polymerase I complex	1.32e-02	1.00e+00	6.231	1	4	10
GO:0001054	RNA polymerase I activity	1.32e-02	1.00e+00	6.231	1	4	10
GO:0016409	palmitoyltransferase activity	1.59e-02	1.00e+00	5.968	1	1	12
GO:0004527	exonuclease activity	1.59e-02	1.00e+00	5.968	1	4	12
GO:0010906	regulation of glucose metabolic process	1.72e-02	1.00e+00	5.853	1	1	13
GO:0005666	DNA-directed RNA polymerase III complex	1.72e-02	1.00e+00	5.853	1	3	13
GO:0005665	DNA-directed RNA polymerase II, core complex	1.72e-02	1.00e+00	5.853	1	3	13
GO:0001056	RNA polymerase III activity	1.72e-02	1.00e+00	5.853	1	3	13
GO:0008156	negative regulation of DNA replication	1.72e-02	1.00e+00	5.853	1	1	13
GO:0006386	termination of RNA polymerase III transcription	1.85e-02	1.00e+00	5.746	1	3	14
GO:0006385	transcription elongation from RNA polymerase III promoter	1.85e-02	1.00e+00	5.746	1	3	14
GO:0016746	transferase activity, transferring acyl groups	1.85e-02	1.00e+00	5.746	1	2	14
GO:0043393	regulation of protein binding	1.85e-02	1.00e+00	5.746	1	2	14
GO:0016922	ligand-dependent nuclear receptor binding	1.98e-02	1.00e+00	5.646	1	2	15
GO:0018345	protein palmitoylation	1.98e-02	1.00e+00	5.646	1	1	15
GO:0070932	histone H3 deacetylation	1.98e-02	1.00e+00	5.646	1	2	15
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	2.04e-02	1.00e+00	2.305	3	29	456
GO:0019706	protein-cysteine S-palmitoyltransferase activity	2.24e-02	1.00e+00	5.466	1	1	17
GO:0001227	RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription	2.24e-02	1.00e+00	5.466	1	2	17
GO:0003899	DNA-directed RNA polymerase activity	2.37e-02	1.00e+00	5.383	1	3	18
GO:0035257	nuclear hormone receptor binding	2.37e-02	1.00e+00	5.383	1	1	18
GO:0016573	histone acetylation	2.50e-02	1.00e+00	5.305	1	1	19
GO:0036464	cytoplasmic ribonucleoprotein granule	2.50e-02	1.00e+00	5.305	1	1	19
GO:0006606	protein import into nucleus	2.89e-02	1.00e+00	5.094	1	3	22
GO:0006687	glycosphingolipid metabolic process	2.89e-02	1.00e+00	5.094	1	1	22
GO:0006281	DNA repair	2.89e-02	1.00e+00	2.888	2	24	203
GO:0002376	immune system process	3.02e-02	1.00e+00	5.029	1	2	23
GO:0006370	7-methylguanosine mRNA capping	3.15e-02	1.00e+00	4.968	1	5	24
GO:0030901	midbrain development	3.28e-02	1.00e+00	4.909	1	1	25
GO:0005902	microvillus	3.28e-02	1.00e+00	4.909	1	1	25
GO:0000976	transcription regulatory region sequence-specific DNA binding	3.28e-02	1.00e+00	4.909	1	3	25
GO:0006360	transcription from RNA polymerase I promoter	3.54e-02	1.00e+00	4.798	1	4	27
GO:0050885	neuromuscular process controlling balance	3.67e-02	1.00e+00	4.746	1	1	28
GO:0006383	transcription from RNA polymerase III promoter	3.79e-02	1.00e+00	4.695	1	6	29
GO:0042752	regulation of circadian rhythm	3.79e-02	1.00e+00	4.695	1	5	29
GO:0030374	ligand-dependent nuclear receptor transcription coactivator activity	3.92e-02	1.00e+00	4.646	1	3	30
GO:0004402	histone acetyltransferase activity	3.92e-02	1.00e+00	4.646	1	3	30
GO:0090305	nucleic acid phosphodiester bond hydrolysis	4.05e-02	1.00e+00	4.599	1	6	31
GO:0000910	cytokinesis	4.31e-02	1.00e+00	4.509	1	2	33
GO:0050434	positive regulation of viral transcription	4.56e-02	1.00e+00	4.424	1	5	35
GO:0006351	transcription, DNA-templated	4.65e-02	1.00e+00	1.482	4	47	1076
GO:0030900	forebrain development	4.69e-02	1.00e+00	4.383	1	2	36
GO:0006665	sphingolipid metabolic process	4.95e-02	1.00e+00	4.305	1	1	38
GO:0048511	rhythmic process	4.95e-02	1.00e+00	4.305	1	5	38
GO:0006396	RNA processing	5.20e-02	1.00e+00	4.231	1	4	40
GO:0006283	transcription-coupled nucleotide-excision repair	5.20e-02	1.00e+00	4.231	1	6	40
GO:0004867	serine-type endopeptidase inhibitor activity	5.45e-02	1.00e+00	4.161	1	1	42
GO:0001047	core promoter binding	5.45e-02	1.00e+00	4.161	1	4	42
GO:0008203	cholesterol metabolic process	6.08e-02	1.00e+00	3.998	1	2	47
GO:0007626	locomotory behavior	6.08e-02	1.00e+00	3.998	1	1	47
GO:0032481	positive regulation of type I interferon production	6.21e-02	1.00e+00	3.968	1	3	48
GO:0006355	regulation of transcription, DNA-templated	6.44e-02	1.00e+00	1.656	3	31	715
GO:0006310	DNA recombination	6.46e-02	1.00e+00	3.909	1	8	50
GO:0016020	membrane	6.65e-02	1.00e+00	1.316	4	56	1207
GO:0006368	transcription elongation from RNA polymerase II promoter	6.71e-02	1.00e+00	3.853	1	8	52
GO:0006289	nucleotide-excision repair	6.83e-02	1.00e+00	3.825	1	6	53
GO:0000777	condensed chromosome kinetochore	7.33e-02	1.00e+00	3.720	1	6	57
GO:0042826	histone deacetylase binding	7.46e-02	1.00e+00	3.695	1	5	58
GO:0071013	catalytic step 2 spliceosome	7.83e-02	1.00e+00	3.622	1	5	61
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	8.07e-02	1.00e+00	3.576	1	2	63
GO:0003676	nucleic acid binding	8.44e-02	1.00e+00	3.509	1	4	66
GO:0010951	negative regulation of endopeptidase activity	9.06e-02	1.00e+00	3.403	1	2	71
GO:0001649	osteoblast differentiation	9.42e-02	1.00e+00	3.344	1	5	74
GO:0030529	ribonucleoprotein complex	1.04e-01	1.00e+00	3.195	1	5	82
GO:0003690	double-stranded DNA binding	1.05e-01	1.00e+00	3.178	1	6	83
GO:0044255	cellular lipid metabolic process	1.12e-01	1.00e+00	3.077	1	2	89
GO:0008201	heparin binding	1.15e-01	1.00e+00	3.045	1	4	91
GO:0006260	DNA replication	1.18e-01	1.00e+00	2.998	1	9	94
GO:0046983	protein dimerization activity	1.18e-01	1.00e+00	2.998	1	2	94
GO:0006397	mRNA processing	1.37e-01	1.00e+00	2.772	1	12	110
GO:0010467	gene expression	1.57e-01	1.00e+00	1.490	2	49	535
GO:0031965	nuclear membrane	1.60e-01	1.00e+00	2.531	1	8	130
GO:0044212	transcription regulatory region DNA binding	1.75e-01	1.00e+00	2.393	1	13	143
GO:0003700	sequence-specific DNA binding transcription factor activity	1.79e-01	1.00e+00	1.368	2	22	582
GO:0004871	signal transducer activity	1.80e-01	1.00e+00	2.344	1	4	148
GO:0006367	transcription initiation from RNA polymerase II promoter	1.94e-01	1.00e+00	2.222	1	18	161
GO:0000166	nucleotide binding	2.11e-01	1.00e+00	2.094	1	13	176
GO:0003713	transcription coactivator activity	2.19e-01	1.00e+00	2.029	1	21	184
GO:0015031	protein transport	2.39e-01	1.00e+00	1.888	1	10	203
GO:0008134	transcription factor binding	2.45e-01	1.00e+00	1.846	1	10	209
GO:0030198	extracellular matrix organization	2.58e-01	1.00e+00	1.765	1	7	221
GO:0007186	G-protein coupled receptor signaling pathway	2.66e-01	1.00e+00	1.714	1	4	229
GO:0003723	RNA binding	2.83e-01	1.00e+00	1.605	1	22	247
GO:0003682	chromatin binding	2.88e-01	1.00e+00	1.576	1	15	252
GO:0044822	poly(A) RNA binding	2.88e-01	1.00e+00	0.911	2	45	799
GO:0043565	sequence-specific DNA binding	3.10e-01	1.00e+00	1.450	1	8	275
GO:0044281	small molecule metabolic process	3.11e-01	1.00e+00	0.832	2	35	844
GO:0008285	negative regulation of cell proliferation	3.12e-01	1.00e+00	1.439	1	11	277
GO:0009986	cell surface	3.25e-01	1.00e+00	1.368	1	5	291
GO:0016021	integral component of membrane	3.32e-01	1.00e+00	0.562	3	19	1526
GO:0000278	mitotic cell cycle	3.46e-01	1.00e+00	1.258	1	28	314
GO:0045892	negative regulation of transcription, DNA-templated	3.49e-01	1.00e+00	1.245	1	17	317
GO:0006366	transcription from RNA polymerase II promoter	3.70e-01	1.00e+00	1.139	1	23	341
GO:0042802	identical protein binding	3.81e-01	1.00e+00	1.085	1	15	354
GO:0005794	Golgi apparatus	4.32e-01	1.00e+00	0.856	1	6	415
GO:0005886	plasma membrane	4.33e-01	1.00e+00	0.337	3	46	1784
GO:0005829	cytosol	4.35e-01	1.00e+00	0.335	3	88	1787
GO:0016032	viral process	4.42e-01	1.00e+00	0.811	1	30	428
GO:0045087	innate immune response	4.60e-01	1.00e+00	0.733	1	12	452
GO:0005730	nucleolus	4.95e-01	1.00e+00	0.304	2	74	1217
GO:0007165	signal transduction	5.73e-01	1.00e+00	0.282	1	24	618
GO:0045944	positive regulation of transcription from RNA polymerase II promoter	5.88e-01	1.00e+00	0.222	1	29	644
GO:0008270	zinc ion binding	6.34e-01	1.00e+00	0.047	1	39	727
GO:0070062	extracellular vesicular exosome	6.69e-01	1.00e+00	-0.127	2	51	1641
GO:0005515	protein binding	7.06e-01	1.00e+00	-0.135	5	198	4124
GO:0005524	ATP binding	7.12e-01	1.00e+00	-0.248	1	37	892
GO:0005737	cytoplasm	7.24e-01	1.00e+00	-0.225	3	127	2633

chia-Fav

reg-snw-8888

Statistics

Genes (13)

Interactions (14)

Related GO terms (137)