reg-snw-26121

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.202	2.80e-07	4.62e-02	3.50e-02

chia-screen-data-Fav-reg-snw-26121 subnetwork

Genes (9)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
SYNCRIP	10492	42	-2.401	2.503	144	TF	Yes	Yes
[ PRPF31 ]	26121	1	-1.606	2.202	23	-	-	-
AGPS	8540	23	-2.424	2.410	27	-	Yes	Yes
REXO4	57109	5	-1.743	2.287	95	TF	-	-
NUP93	9688	2	-1.836	2.204	11	-	-	-
POLR2H	5437	2	-1.960	2.204	14	-	-	-
ETF1	2107	35	-2.829	2.503	6	-	Yes	Yes
CCT7	10574	40	-2.335	2.459	38	-	Yes	-
CPSF3	51692	43	-2.686	2.503	31	-	Yes	Yes

Interactions (8)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
POLR2H	5437	REXO4	57109	pd	<	reg.ITFP.txt: no annot
CCT7	10574	REXO4	57109	pd	<	reg.ITFP.txt: no annot
AGPS	8540	SYNCRIP	10492	pd	<	reg.ITFP.txt: no annot
NUP93	9688	REXO4	57109	pd	<	reg.ITFP.txt: no annot
NUP93	9688	SYNCRIP	10492	pd	<	reg.ITFP.txt: no annot
PRPF31	26121	REXO4	57109	pd	<	reg.ITFP.txt: no annot
ETF1	2107	SYNCRIP	10492	pd	<	reg.ITFP.txt: no annot
SYNCRIP	10492	CPSF3	51692	pd	>	reg.ITFP.txt: no annot

Related GO terms (127)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0000398	mRNA splicing, via spliceosome	3.37e-06	3.29e-02	5.083	4	15	128
GO:0008380	RNA splicing	3.69e-04	1.00e+00	4.302	3	21	165
GO:0008609	alkylglycerone-phosphate synthase activity	9.22e-04	1.00e+00	10.083	1	1	1
GO:0016149	translation release factor activity, codon specific	9.22e-04	1.00e+00	10.083	1	1	1
GO:0008079	translation termination factor activity	9.22e-04	1.00e+00	10.083	1	1	1
GO:0070990	snRNP binding	9.22e-04	1.00e+00	10.083	1	1	1
GO:0005690	U4atac snRNP	9.22e-04	1.00e+00	10.083	1	1	1
GO:0003723	RNA binding	1.20e-03	1.00e+00	3.720	3	22	247
GO:0005684	U2-type spliceosomal complex	1.84e-03	1.00e+00	9.083	1	2	2
GO:0003747	translation release factor activity	1.84e-03	1.00e+00	9.083	1	2	2
GO:0008611	ether lipid biosynthetic process	1.84e-03	1.00e+00	9.083	1	1	2
GO:0030529	ribonucleoprotein complex	2.41e-03	1.00e+00	4.726	2	5	82
GO:0008762	UDP-N-acetylmuramate dehydrogenase activity	2.76e-03	1.00e+00	8.499	1	1	3
GO:0006449	regulation of translational termination	3.68e-03	1.00e+00	8.083	1	1	4
GO:0097452	GAIT complex	3.68e-03	1.00e+00	8.083	1	2	4
GO:0046540	U4/U6 x U5 tri-snRNP complex	3.68e-03	1.00e+00	8.083	1	1	4
GO:0044822	poly(A) RNA binding	4.01e-03	1.00e+00	2.441	4	45	799
GO:0004521	endoribonuclease activity	4.60e-03	1.00e+00	7.762	1	1	5
GO:0008610	lipid biosynthetic process	4.60e-03	1.00e+00	7.762	1	1	5
GO:0006398	histone mRNA 3'-end processing	4.60e-03	1.00e+00	7.762	1	1	5
GO:0071204	histone pre-mRNA 3'end processing complex	4.60e-03	1.00e+00	7.762	1	1	5
GO:0070934	CRD-mediated mRNA stabilization	4.60e-03	1.00e+00	7.762	1	2	5
GO:0070937	CRD-mediated mRNA stability complex	5.52e-03	1.00e+00	7.499	1	2	6
GO:0001055	RNA polymerase II activity	5.52e-03	1.00e+00	7.499	1	3	6
GO:0016032	viral process	5.76e-03	1.00e+00	2.927	3	30	428
GO:0002199	zona pellucida receptor complex	6.44e-03	1.00e+00	7.276	1	4	7
GO:0005832	chaperonin-containing T-complex	6.44e-03	1.00e+00	7.276	1	4	7
GO:0008409	5'-3' exonuclease activity	6.44e-03	1.00e+00	7.276	1	2	7
GO:0071949	FAD binding	7.35e-03	1.00e+00	7.083	1	1	8
GO:0051292	nuclear pore complex assembly	7.35e-03	1.00e+00	7.083	1	4	8
GO:0017056	structural constituent of nuclear pore	7.35e-03	1.00e+00	7.083	1	3	8
GO:0006379	mRNA cleavage	8.27e-03	1.00e+00	6.914	1	2	9
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	8.27e-03	1.00e+00	6.914	1	3	9
GO:0000244	spliceosomal tri-snRNP complex assembly	8.27e-03	1.00e+00	6.914	1	1	9
GO:0005687	U4 snRNP	8.27e-03	1.00e+00	6.914	1	1	9
GO:0005736	DNA-directed RNA polymerase I complex	9.18e-03	1.00e+00	6.762	1	4	10
GO:0001054	RNA polymerase I activity	9.18e-03	1.00e+00	6.762	1	4	10
GO:0008143	poly(A) binding	9.18e-03	1.00e+00	6.762	1	2	10
GO:0006479	protein methylation	1.01e-02	1.00e+00	6.624	1	2	11
GO:0010467	gene expression	1.07e-02	1.00e+00	2.605	3	49	535
GO:0004527	exonuclease activity	1.10e-02	1.00e+00	6.499	1	4	12
GO:0034399	nuclear periphery	1.10e-02	1.00e+00	6.499	1	3	12
GO:0005665	DNA-directed RNA polymerase II, core complex	1.19e-02	1.00e+00	6.383	1	3	13
GO:0001056	RNA polymerase III activity	1.19e-02	1.00e+00	6.383	1	3	13
GO:0005666	DNA-directed RNA polymerase III complex	1.19e-02	1.00e+00	6.383	1	3	13
GO:0006385	transcription elongation from RNA polymerase III promoter	1.28e-02	1.00e+00	6.276	1	3	14
GO:0006386	termination of RNA polymerase III transcription	1.28e-02	1.00e+00	6.276	1	3	14
GO:0007339	binding of sperm to zona pellucida	1.37e-02	1.00e+00	6.177	1	4	15
GO:0005782	peroxisomal matrix	1.47e-02	1.00e+00	6.083	1	1	16
GO:0043021	ribonucleoprotein complex binding	1.56e-02	1.00e+00	5.996	1	1	17
GO:0043022	ribosome binding	1.56e-02	1.00e+00	5.996	1	2	17
GO:0071339	MLL1 complex	1.65e-02	1.00e+00	5.914	1	2	18
GO:0006378	mRNA polyadenylation	1.65e-02	1.00e+00	5.914	1	3	18
GO:0071346	cellular response to interferon-gamma	1.83e-02	1.00e+00	5.762	1	2	20
GO:0006362	transcription elongation from RNA polymerase I promoter	1.83e-02	1.00e+00	5.762	1	3	20
GO:0006363	termination of RNA polymerase I transcription	1.92e-02	1.00e+00	5.691	1	3	21
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	1.92e-02	1.00e+00	5.691	1	2	21
GO:0051084	'de novo' posttranslational protein folding	2.01e-02	1.00e+00	5.624	1	4	22
GO:0006361	transcription initiation from RNA polymerase I promoter	2.10e-02	1.00e+00	5.560	1	2	23
GO:0006370	7-methylguanosine mRNA capping	2.19e-02	1.00e+00	5.499	1	5	24
GO:0010827	regulation of glucose transport	2.28e-02	1.00e+00	5.440	1	7	25
GO:0006360	transcription from RNA polymerase I promoter	2.46e-02	1.00e+00	5.329	1	4	27
GO:0005778	peroxisomal membrane	2.64e-02	1.00e+00	5.225	1	3	29
GO:0006383	transcription from RNA polymerase III promoter	2.64e-02	1.00e+00	5.225	1	6	29
GO:0090305	nucleic acid phosphodiester bond hydrolysis	2.82e-02	1.00e+00	5.129	1	6	31
GO:0007077	mitotic nuclear envelope disassembly	2.91e-02	1.00e+00	5.083	1	9	32
GO:0015030	Cajal body	2.91e-02	1.00e+00	5.083	1	3	32
GO:0017148	negative regulation of translation	3.00e-02	1.00e+00	5.039	1	5	33
GO:0050434	positive regulation of viral transcription	3.18e-02	1.00e+00	4.954	1	5	35
GO:0031124	mRNA 3'-end processing	3.18e-02	1.00e+00	4.954	1	4	35
GO:0044297	cell body	3.18e-02	1.00e+00	4.954	1	5	35
GO:0008645	hexose transport	3.27e-02	1.00e+00	4.914	1	8	36
GO:0006369	termination of RNA polymerase II transcription	3.45e-02	1.00e+00	4.836	1	5	38
GO:0006396	RNA processing	3.63e-02	1.00e+00	4.762	1	4	40
GO:0006283	transcription-coupled nucleotide-excision repair	3.63e-02	1.00e+00	4.762	1	6	40
GO:0006366	transcription from RNA polymerase II promoter	3.72e-02	1.00e+00	2.670	2	23	341
GO:0044267	cellular protein metabolic process	3.94e-02	1.00e+00	2.624	2	14	352
GO:0006406	mRNA export from nucleus	3.98e-02	1.00e+00	4.624	1	7	44
GO:0005654	nucleoplasm	4.01e-02	1.00e+00	1.894	3	68	876
GO:0051028	mRNA transport	4.25e-02	1.00e+00	4.529	1	5	47
GO:0032481	positive regulation of type I interferon production	4.34e-02	1.00e+00	4.499	1	3	48
GO:0015758	glucose transport	4.34e-02	1.00e+00	4.499	1	8	48
GO:0005777	peroxisome	4.52e-02	1.00e+00	4.440	1	2	50
GO:0005643	nuclear pore	4.61e-02	1.00e+00	4.411	1	12	51
GO:0006368	transcription elongation from RNA polymerase II promoter	4.69e-02	1.00e+00	4.383	1	8	52
GO:0006289	nucleotide-excision repair	4.78e-02	1.00e+00	4.356	1	6	53
GO:0071013	catalytic step 2 spliceosome	5.49e-02	1.00e+00	4.153	1	5	61
GO:0006415	translational termination	5.66e-02	1.00e+00	4.106	1	2	63
GO:0051082	unfolded protein binding	6.27e-02	1.00e+00	3.954	1	5	70
GO:0001649	osteoblast differentiation	6.62e-02	1.00e+00	3.874	1	5	74
GO:0005635	nuclear envelope	7.40e-02	1.00e+00	3.708	1	6	83
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	7.48e-02	1.00e+00	3.691	1	5	84
GO:0044255	cellular lipid metabolic process	7.91e-02	1.00e+00	3.608	1	2	89
GO:0006457	protein folding	8.60e-02	1.00e+00	3.484	1	5	97
GO:0016020	membrane	8.94e-02	1.00e+00	1.431	3	56	1207
GO:0016607	nuclear speck	1.07e-01	1.00e+00	3.153	1	8	122
GO:0031965	nuclear membrane	1.14e-01	1.00e+00	3.061	1	8	130
GO:0005739	mitochondrion	1.19e-01	1.00e+00	1.719	2	32	659
GO:0006367	transcription initiation from RNA polymerase II promoter	1.39e-01	1.00e+00	2.753	1	18	161
GO:0005874	microtubule	1.41e-01	1.00e+00	2.735	1	10	163
GO:0016071	mRNA metabolic process	1.46e-01	1.00e+00	2.674	1	10	170
GO:0019221	cytokine-mediated signaling pathway	1.48e-01	1.00e+00	2.657	1	10	172
GO:0000166	nucleotide binding	1.51e-01	1.00e+00	2.624	1	13	176
GO:0006412	translation	1.53e-01	1.00e+00	2.608	1	12	178
GO:0005975	carbohydrate metabolic process	1.59e-01	1.00e+00	2.544	1	10	186
GO:0016070	RNA metabolic process	1.61e-01	1.00e+00	2.529	1	10	188
GO:0015031	protein transport	1.72e-01	1.00e+00	2.418	1	10	203
GO:0006281	DNA repair	1.72e-01	1.00e+00	2.418	1	24	203
GO:0044281	small molecule metabolic process	1.79e-01	1.00e+00	1.362	2	35	844
GO:0043231	intracellular membrane-bounded organelle	1.84e-01	1.00e+00	2.315	1	8	218
GO:0005829	cytosol	2.18e-01	1.00e+00	0.865	3	88	1787
GO:0055114	oxidation-reduction process	2.51e-01	1.00e+00	1.817	1	9	308
GO:0000278	mitotic cell cycle	2.55e-01	1.00e+00	1.789	1	28	314
GO:0055085	transmembrane transport	2.66e-01	1.00e+00	1.722	1	13	329
GO:0042802	identical protein binding	2.83e-01	1.00e+00	1.616	1	15	354
GO:0005783	endoplasmic reticulum	3.01e-01	1.00e+00	1.510	1	12	381
GO:0005730	nucleolus	3.11e-01	1.00e+00	0.834	2	74	1217
GO:0005515	protein binding	3.15e-01	1.00e+00	0.396	5	198	4124
GO:0045087	innate immune response	3.47e-01	1.00e+00	1.263	1	12	452
GO:0005634	nucleus	3.47e-01	1.00e+00	0.419	4	158	3246
GO:0003700	sequence-specific DNA binding transcription factor activity	4.25e-01	1.00e+00	0.899	1	22	582
GO:0006355	regulation of transcription, DNA-templated	4.96e-01	1.00e+00	0.602	1	31	715
GO:0005524	ATP binding	5.78e-01	1.00e+00	0.283	1	37	892
GO:0046872	metal ion binding	5.96e-01	1.00e+00	0.216	1	24	934
GO:0003677	DNA binding	6.01e-01	1.00e+00	0.196	1	52	947
GO:0005737	cytoplasm	7.45e-01	1.00e+00	-0.279	2	127	2633
GO:0070062	extracellular vesicular exosome	8.09e-01	1.00e+00	-0.597	1	51	1641

chia-Fav

reg-snw-26121

Statistics

Genes (9)

Interactions (8)

Related GO terms (127)