reg-snw-23310

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.232	1.97e-07	3.84e-02	2.94e-02

chia-screen-data-Fav-reg-snw-23310 subnetwork

Genes (10)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
NDUFA4L2	56901	44	-2.477	2.459	21	-	Yes	-
CENPA	1058	27	-2.185	2.393	205	TF	Yes	-
[ NCAPD3 ]	23310	1	-1.588	2.232	34	TF	-	-
NASP	4678	1	-1.712	2.232	46	TF	-	-
SYNCRIP	10492	42	-2.401	2.503	144	TF	Yes	Yes
SUV39H2	79723	27	-2.307	2.410	21	-	Yes	Yes
AGPS	8540	23	-2.424	2.410	27	-	Yes	Yes
HDAC1	3065	1	-1.712	2.232	13	TF	-	-
ETF1	2107	35	-2.829	2.503	6	-	Yes	Yes
CPSF3	51692	43	-2.686	2.503	31	-	Yes	Yes

Interactions (10)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
NCAPD3	23310	SUV39H2	79723	pd	>	reg.ITFP.txt: no annot
CENPA	1058	SUV39H2	79723	pd	>	reg.ITFP.txt: no annot
ETF1	2107	SYNCRIP	10492	pd	<	reg.ITFP.txt: no annot
AGPS	8540	SYNCRIP	10492	pd	<	reg.ITFP.txt: no annot
HDAC1	3065	NASP	4678	pd	<	reg.ITFP.txt: no annot
SYNCRIP	10492	SUV39H2	79723	pd	>	reg.ITFP.txt: no annot
SYNCRIP	10492	CPSF3	51692	pd	>	reg.ITFP.txt: no annot
NASP	4678	NCAPD3	23310	pd	<>	reg.ITFP.txt: no annot
CENPA	1058	NDUFA4L2	56901	pd	>	reg.ITFP.txt: no annot
HDAC1	3065	NCAPD3	23310	pd	<	reg.ITFP.txt: no annot

Related GO terms (162)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0000976	transcription regulatory region sequence-specific DNA binding	2.80e-04	1.00e+00	6.288	2	3	25
GO:0000775	chromosome, centromeric region	7.58e-04	1.00e+00	5.574	2	6	41
GO:0005654	nucleoplasm	9.86e-04	1.00e+00	2.479	5	68	876
GO:0000799	nuclear condensin complex	1.02e-03	1.00e+00	9.931	1	1	1
GO:0016149	translation release factor activity, codon specific	1.02e-03	1.00e+00	9.931	1	1	1
GO:0000939	condensed chromosome inner kinetochore	1.02e-03	1.00e+00	9.931	1	1	1
GO:0008609	alkylglycerone-phosphate synthase activity	1.02e-03	1.00e+00	9.931	1	1	1
GO:0008079	translation termination factor activity	1.02e-03	1.00e+00	9.931	1	1	1
GO:0006338	chromatin remodeling	1.36e-03	1.00e+00	5.150	2	7	55
GO:0000785	chromatin	1.57e-03	1.00e+00	5.049	2	6	59
GO:0003723	RNA binding	1.68e-03	1.00e+00	3.568	3	22	247
GO:0003747	translation release factor activity	2.05e-03	1.00e+00	8.931	1	2	2
GO:0008611	ether lipid biosynthetic process	2.05e-03	1.00e+00	8.931	1	1	2
GO:0030529	ribonucleoprotein complex	3.00e-03	1.00e+00	4.574	2	5	82
GO:0008762	UDP-N-acetylmuramate dehydrogenase activity	3.07e-03	1.00e+00	8.347	1	1	3
GO:0036123	histone H3-K9 dimethylation	3.07e-03	1.00e+00	8.347	1	1	3
GO:0000778	condensed nuclear chromosome kinetochore	3.07e-03	1.00e+00	8.347	1	2	3
GO:0043486	histone exchange	3.07e-03	1.00e+00	8.347	1	1	3
GO:0061198	fungiform papilla formation	3.07e-03	1.00e+00	8.347	1	1	3
GO:0042585	germinal vesicle	3.07e-03	1.00e+00	8.347	1	2	3
GO:0071459	protein localization to chromosome, centromeric region	3.07e-03	1.00e+00	8.347	1	1	3
GO:0000278	mitotic cell cycle	3.34e-03	1.00e+00	3.222	3	28	314
GO:0097452	GAIT complex	4.09e-03	1.00e+00	7.931	1	2	4
GO:0006449	regulation of translational termination	4.09e-03	1.00e+00	7.931	1	1	4
GO:0036124	histone H3-K9 trimethylation	4.09e-03	1.00e+00	7.931	1	2	4
GO:0006333	chromatin assembly or disassembly	4.09e-03	1.00e+00	7.931	1	1	4
GO:0031618	nuclear pericentric heterochromatin	4.09e-03	1.00e+00	7.931	1	1	4
GO:0004521	endoribonuclease activity	5.11e-03	1.00e+00	7.610	1	1	5
GO:0008610	lipid biosynthetic process	5.11e-03	1.00e+00	7.610	1	1	5
GO:0009913	epidermal cell differentiation	5.11e-03	1.00e+00	7.610	1	2	5
GO:0006398	histone mRNA 3'-end processing	5.11e-03	1.00e+00	7.610	1	1	5
GO:0070934	CRD-mediated mRNA stabilization	5.11e-03	1.00e+00	7.610	1	2	5
GO:0071204	histone pre-mRNA 3'end processing complex	5.11e-03	1.00e+00	7.610	1	1	5
GO:0000790	nuclear chromatin	5.24e-03	1.00e+00	4.163	2	9	109
GO:0060789	hair follicle placode formation	6.13e-03	1.00e+00	7.347	1	1	6
GO:0010832	negative regulation of myotube differentiation	6.13e-03	1.00e+00	7.347	1	1	6
GO:0019213	deacetylase activity	6.13e-03	1.00e+00	7.347	1	1	6
GO:0042754	negative regulation of circadian rhythm	6.13e-03	1.00e+00	7.347	1	2	6
GO:0046974	histone methyltransferase activity (H3-K9 specific)	6.13e-03	1.00e+00	7.347	1	1	6
GO:0070937	CRD-mediated mRNA stability complex	6.13e-03	1.00e+00	7.347	1	2	6
GO:0007140	male meiosis	7.15e-03	1.00e+00	7.124	1	1	7
GO:0008409	5'-3' exonuclease activity	7.15e-03	1.00e+00	7.124	1	2	7
GO:0010870	positive regulation of receptor biosynthetic process	7.15e-03	1.00e+00	7.124	1	1	7
GO:0000780	condensed nuclear chromosome, centromeric region	7.15e-03	1.00e+00	7.124	1	1	7
GO:0051382	kinetochore assembly	7.15e-03	1.00e+00	7.124	1	2	7
GO:0000398	mRNA splicing, via spliceosome	7.16e-03	1.00e+00	3.931	2	15	128
GO:0016032	viral process	7.97e-03	1.00e+00	2.775	3	30	428
GO:0006476	protein deacetylation	8.17e-03	1.00e+00	6.931	1	1	8
GO:0097372	NAD-dependent histone deacetylase activity (H3-K18 specific)	8.17e-03	1.00e+00	6.931	1	1	8
GO:0071949	FAD binding	8.17e-03	1.00e+00	6.931	1	1	8
GO:0033558	protein deacetylase activity	8.17e-03	1.00e+00	6.931	1	1	8
GO:0046970	NAD-dependent histone deacetylase activity (H4-K16 specific)	9.18e-03	1.00e+00	6.762	1	1	9
GO:0006379	mRNA cleavage	9.18e-03	1.00e+00	6.762	1	2	9
GO:0046969	NAD-dependent histone deacetylase activity (H3-K9 specific)	9.18e-03	1.00e+00	6.762	1	1	9
GO:0061647	histone H3-K9 modification	9.18e-03	1.00e+00	6.762	1	1	9
GO:0007076	mitotic chromosome condensation	9.18e-03	1.00e+00	6.762	1	1	9
GO:0061029	eyelid development in camera-type eye	9.18e-03	1.00e+00	6.762	1	1	9
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	9.18e-03	1.00e+00	6.762	1	3	9
GO:0032041	NAD-dependent histone deacetylase activity (H3-K14 specific)	9.18e-03	1.00e+00	6.762	1	1	9
GO:0008143	poly(A) binding	1.02e-02	1.00e+00	6.610	1	2	10
GO:0060766	negative regulation of androgen receptor signaling pathway	1.12e-02	1.00e+00	6.472	1	4	11
GO:0006479	protein methylation	1.12e-02	1.00e+00	6.472	1	2	11
GO:0016580	Sin3 complex	1.12e-02	1.00e+00	6.472	1	1	11
GO:0043922	negative regulation by host of viral transcription	1.12e-02	1.00e+00	6.472	1	1	11
GO:0070933	histone H4 deacetylation	1.12e-02	1.00e+00	6.472	1	1	11
GO:0008380	RNA splicing	1.17e-02	1.00e+00	3.565	2	21	165
GO:0001824	blastocyst development	1.22e-02	1.00e+00	6.347	1	1	12
GO:0000132	establishment of mitotic spindle orientation	1.22e-02	1.00e+00	6.347	1	2	12
GO:0004407	histone deacetylase activity	1.22e-02	1.00e+00	6.347	1	1	12
GO:0006336	DNA replication-independent nucleosome assembly	1.32e-02	1.00e+00	6.231	1	2	13
GO:0006335	DNA replication-dependent nucleosome assembly	1.32e-02	1.00e+00	6.231	1	2	13
GO:0016581	NuRD complex	1.43e-02	1.00e+00	6.124	1	1	14
GO:0033613	activating transcription factor binding	1.43e-02	1.00e+00	6.124	1	1	14
GO:0016575	histone deacetylation	1.43e-02	1.00e+00	6.124	1	2	14
GO:0051879	Hsp90 protein binding	1.43e-02	1.00e+00	6.124	1	1	14
GO:0010467	gene expression	1.47e-02	1.00e+00	2.453	3	49	535
GO:0070932	histone H3 deacetylation	1.53e-02	1.00e+00	6.025	1	2	15
GO:0005782	peroxisomal matrix	1.63e-02	1.00e+00	5.931	1	1	16
GO:0043022	ribosome binding	1.73e-02	1.00e+00	5.844	1	2	17
GO:0006378	mRNA polyadenylation	1.83e-02	1.00e+00	5.762	1	3	18
GO:0001106	RNA polymerase II transcription corepressor activity	1.83e-02	1.00e+00	5.762	1	2	18
GO:0043234	protein complex	1.85e-02	1.00e+00	3.217	2	13	210
GO:0043044	ATP-dependent chromatin remodeling	2.03e-02	1.00e+00	5.610	1	3	20
GO:0034080	CENP-A containing nucleosome assembly	2.03e-02	1.00e+00	5.610	1	2	20
GO:0071346	cellular response to interferon-gamma	2.03e-02	1.00e+00	5.610	1	2	20
GO:0005720	nuclear heterochromatin	2.03e-02	1.00e+00	5.610	1	3	20
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	2.13e-02	1.00e+00	5.539	1	2	21
GO:0001103	RNA polymerase II repressing transcription factor binding	2.33e-02	1.00e+00	5.408	1	2	23
GO:0070491	repressing transcription factor binding	2.33e-02	1.00e+00	5.408	1	2	23
GO:0000118	histone deacetylase complex	2.33e-02	1.00e+00	5.408	1	3	23
GO:0031492	nucleosomal DNA binding	2.53e-02	1.00e+00	5.288	1	3	25
GO:0003682	chromatin binding	2.60e-02	1.00e+00	2.954	2	15	252
GO:0042733	embryonic digit morphogenesis	2.93e-02	1.00e+00	5.073	1	2	29
GO:0005778	peroxisomal membrane	2.93e-02	1.00e+00	5.073	1	3	29
GO:0045786	negative regulation of cell cycle	3.03e-02	1.00e+00	5.025	1	3	30
GO:0035064	methylated histone binding	3.13e-02	1.00e+00	4.977	1	1	31
GO:0017148	negative regulation of translation	3.33e-02	1.00e+00	4.887	1	5	33
GO:0000786	nucleosome	3.43e-02	1.00e+00	4.844	1	2	34
GO:0031124	mRNA 3'-end processing	3.53e-02	1.00e+00	4.802	1	4	35
GO:0006369	termination of RNA polymerase II transcription	3.83e-02	1.00e+00	4.684	1	5	38
GO:0048511	rhythmic process	3.83e-02	1.00e+00	4.684	1	5	38
GO:0045892	negative regulation of transcription, DNA-templated	3.98e-02	1.00e+00	2.623	2	17	317
GO:0006396	RNA processing	4.02e-02	1.00e+00	4.610	1	4	40
GO:0042475	odontogenesis of dentin-containing tooth	4.02e-02	1.00e+00	4.610	1	2	40
GO:0032922	circadian regulation of gene expression	4.12e-02	1.00e+00	4.574	1	2	41
GO:0001047	core promoter binding	4.22e-02	1.00e+00	4.539	1	4	42
GO:0006406	mRNA export from nucleus	4.42e-02	1.00e+00	4.472	1	7	44
GO:0000980	RNA polymerase II distal enhancer sequence-specific DNA binding	4.91e-02	1.00e+00	4.317	1	4	49
GO:0005777	peroxisome	5.01e-02	1.00e+00	4.288	1	2	50
GO:0006334	nucleosome assembly	5.10e-02	1.00e+00	4.259	1	4	51
GO:0042393	histone binding	5.40e-02	1.00e+00	4.177	1	3	54
GO:0042826	histone deacetylase binding	5.79e-02	1.00e+00	4.073	1	5	58
GO:0071013	catalytic step 2 spliceosome	6.08e-02	1.00e+00	4.001	1	5	61
GO:0006415	translational termination	6.27e-02	1.00e+00	3.954	1	2	63
GO:0016568	chromatin modification	6.75e-02	1.00e+00	3.844	1	3	68
GO:0005515	protein binding	7.32e-02	1.00e+00	0.729	7	198	4124
GO:0001649	osteoblast differentiation	7.33e-02	1.00e+00	3.722	1	5	74
GO:0071456	cellular response to hypoxia	7.52e-02	1.00e+00	3.684	1	2	76
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	7.64e-02	1.00e+00	2.099	2	29	456
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	8.28e-02	1.00e+00	3.539	1	5	84
GO:0044255	cellular lipid metabolic process	8.75e-02	1.00e+00	3.456	1	2	89
GO:0006260	DNA replication	9.22e-02	1.00e+00	3.377	1	9	94
GO:0007219	Notch signaling pathway	9.32e-02	1.00e+00	3.362	1	2	95
GO:0007179	transforming growth factor beta receptor signaling pathway	1.04e-01	1.00e+00	3.190	1	5	107
GO:0007049	cell cycle	1.12e-01	1.00e+00	3.086	1	8	115
GO:0016020	membrane	1.16e-01	1.00e+00	1.279	3	56	1207
GO:0005730	nucleolus	1.19e-01	1.00e+00	1.267	3	74	1217
GO:0000978	RNA polymerase II core promoter proximal region sequence-specific DNA binding	1.36e-01	1.00e+00	2.782	1	7	142
GO:0044212	transcription regulatory region DNA binding	1.37e-01	1.00e+00	2.772	1	13	143
GO:0006367	transcription initiation from RNA polymerase II promoter	1.53e-01	1.00e+00	2.601	1	18	161
GO:0016071	mRNA metabolic process	1.61e-01	1.00e+00	2.522	1	10	170
GO:0000166	nucleotide binding	1.66e-01	1.00e+00	2.472	1	13	176
GO:0006412	translation	1.68e-01	1.00e+00	2.456	1	12	178
GO:0016070	RNA metabolic process	1.77e-01	1.00e+00	2.377	1	10	188
GO:0048011	neurotrophin TRK receptor signaling pathway	1.86e-01	1.00e+00	2.295	1	8	199
GO:0015031	protein transport	1.90e-01	1.00e+00	2.266	1	10	203
GO:0030154	cell differentiation	1.90e-01	1.00e+00	2.259	1	5	204
GO:0044822	poly(A) RNA binding	1.95e-01	1.00e+00	1.289	2	45	799
GO:0008134	transcription factor binding	1.95e-01	1.00e+00	2.224	1	10	209
GO:0019899	enzyme binding	1.95e-01	1.00e+00	2.217	1	7	210
GO:0043231	intracellular membrane-bounded organelle	2.02e-01	1.00e+00	2.163	1	8	218
GO:0008283	cell proliferation	2.20e-01	1.00e+00	2.031	1	8	239
GO:0046982	protein heterodimerization activity	2.41e-01	1.00e+00	1.882	1	11	265
GO:0008284	positive regulation of cell proliferation	2.52e-01	1.00e+00	1.807	1	8	279
GO:0005829	cytosol	2.72e-01	1.00e+00	0.713	3	88	1787
GO:0055114	oxidation-reduction process	2.74e-01	1.00e+00	1.665	1	9	308
GO:0043066	negative regulation of apoptotic process	2.85e-01	1.00e+00	1.601	1	8	322
GO:0007596	blood coagulation	2.98e-01	1.00e+00	1.526	1	13	339
GO:0006366	transcription from RNA polymerase II promoter	2.99e-01	1.00e+00	1.518	1	23	341
GO:0006351	transcription, DNA-templated	3.04e-01	1.00e+00	0.860	2	47	1076
GO:0044267	cellular protein metabolic process	3.07e-01	1.00e+00	1.472	1	14	352
GO:0045893	positive regulation of transcription, DNA-templated	3.26e-01	1.00e+00	1.373	1	21	377
GO:0005783	endoplasmic reticulum	3.28e-01	1.00e+00	1.358	1	12	381
GO:0005634	nucleus	4.38e-01	1.00e+00	0.267	4	158	3246
GO:0003700	sequence-specific DNA binding transcription factor activity	4.59e-01	1.00e+00	0.747	1	22	582
GO:0045944	positive regulation of transcription from RNA polymerase II promoter	4.95e-01	1.00e+00	0.601	1	29	644
GO:0005739	mitochondrion	5.03e-01	1.00e+00	0.567	1	32	659
GO:0005737	cytoplasm	5.33e-01	1.00e+00	0.154	3	127	2633
GO:0008270	zinc ion binding	5.39e-01	1.00e+00	0.426	1	39	727
GO:0044281	small molecule metabolic process	5.95e-01	1.00e+00	0.210	1	35	844
GO:0046872	metal ion binding	6.34e-01	1.00e+00	0.064	1	24	934
GO:0003677	DNA binding	6.40e-01	1.00e+00	0.044	1	52	947

chia-Fav

reg-snw-23310

Statistics

Genes (10)

Interactions (10)

Related GO terms (162)