reg-snw-150962

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.255	1.50e-07	3.33e-02	2.57e-02

chia-screen-data-Fav-reg-snw-150962 subnetwork

Genes (13)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
AHCTF1	25909	6	-2.069	2.326	31	TF	Yes	-
SUV39H2	79723	27	-2.307	2.410	21	-	Yes	Yes
SYNCRIP	10492	42	-2.401	2.503	144	TF	Yes	Yes
AGPS	8540	23	-2.424	2.410	27	-	Yes	Yes
ZDHHC20	253832	9	-2.673	2.326	25	-	Yes	-
GSPT1	2935	32	-2.313	2.503	17	-	Yes	Yes
ETF1	2107	35	-2.829	2.503	6	-	Yes	Yes
CPSF3	51692	43	-2.686	2.503	31	-	Yes	Yes
KLHL8	57563	4	-1.993	2.308	30	TF	-	-
CLASP1	23332	10	-2.365	2.459	39	TF	Yes	-
CGGBP1	8545	5	-2.601	2.326	5	-	Yes	Yes
PAPOLA	10914	9	-1.996	2.455	19	-	-	-
[ PUS10 ]	150962	1	-0.654	2.255	6	-	-	-

Interactions (12)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
SYNCRIP	10492	PAPOLA	10914	pd	>	reg.ITFP.txt: no annot
PAPOLA	10914	CLASP1	23332	pd	<	reg.ITFP.txt: no annot
CLASP1	23332	PUS10	150962	pd	>	reg.ITFP.txt: no annot
AHCTF1	25909	ZDHHC20	253832	pd	>	reg.ITFP.txt: no annot
PAPOLA	10914	AHCTF1	25909	pd	<	reg.ITFP.txt: no annot
AGPS	8540	SYNCRIP	10492	pd	<	reg.ITFP.txt: no annot
SYNCRIP	10492	SUV39H2	79723	pd	>	reg.ITFP.txt: no annot
CLASP1	23332	KLHL8	57563	pd	<>	reg.ITFP.txt: no annot
ETF1	2107	SYNCRIP	10492	pd	<	reg.ITFP.txt: no annot
GSPT1	2935	SYNCRIP	10492	pd	<	reg.ITFP.txt: no annot
CGGBP1	8545	AHCTF1	25909	pd	<	reg.ITFP.txt: no annot
SYNCRIP	10492	CPSF3	51692	pd	>	reg.ITFP.txt: no annot

Related GO terms (145)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0003747	translation release factor activity	1.64e-06	1.60e-02	9.553	2	2	2
GO:0003723	RNA binding	1.08e-05	1.06e-01	3.927	5	22	247
GO:0006479	protein methylation	8.94e-05	8.73e-01	7.094	2	2	11
GO:0000398	mRNA splicing, via spliceosome	5.72e-04	1.00e+00	4.138	3	15	128
GO:0031124	mRNA 3'-end processing	9.50e-04	1.00e+00	5.424	2	4	35
GO:0006369	termination of RNA polymerase II transcription	1.12e-03	1.00e+00	5.305	2	5	38
GO:0008380	RNA splicing	1.20e-03	1.00e+00	3.772	3	21	165
GO:0016149	translation release factor activity, codon specific	1.33e-03	1.00e+00	9.553	1	1	1
GO:0031592	centrosomal corona	1.33e-03	1.00e+00	9.553	1	1	1
GO:0008609	alkylglycerone-phosphate synthase activity	1.33e-03	1.00e+00	9.553	1	1	1
GO:0008079	translation termination factor activity	1.33e-03	1.00e+00	9.553	1	1	1
GO:0000777	condensed chromosome kinetochore	2.51e-03	1.00e+00	4.720	2	6	57
GO:0031111	negative regulation of microtubule polymerization or depolymerization	2.66e-03	1.00e+00	8.553	1	1	2
GO:0030981	cortical microtubule cytoskeleton	2.66e-03	1.00e+00	8.553	1	1	2
GO:0051294	establishment of spindle orientation	2.66e-03	1.00e+00	8.553	1	1	2
GO:0008611	ether lipid biosynthetic process	2.66e-03	1.00e+00	8.553	1	1	2
GO:0000785	chromatin	2.68e-03	1.00e+00	4.670	2	6	59
GO:0006415	translational termination	3.05e-03	1.00e+00	4.576	2	2	63
GO:0008762	UDP-N-acetylmuramate dehydrogenase activity	3.99e-03	1.00e+00	7.968	1	1	3
GO:0036123	histone H3-K9 dimethylation	3.99e-03	1.00e+00	7.968	1	1	3
GO:0030529	ribonucleoprotein complex	5.12e-03	1.00e+00	4.195	2	5	82
GO:0097452	GAIT complex	5.32e-03	1.00e+00	7.553	1	2	4
GO:0004652	polynucleotide adenylyltransferase activity	5.32e-03	1.00e+00	7.553	1	1	4
GO:0006449	regulation of translational termination	5.32e-03	1.00e+00	7.553	1	1	4
GO:0036124	histone H3-K9 trimethylation	5.32e-03	1.00e+00	7.553	1	2	4
GO:0006333	chromatin assembly or disassembly	5.32e-03	1.00e+00	7.553	1	1	4
GO:0043631	RNA polyadenylation	5.32e-03	1.00e+00	7.553	1	1	4
GO:0043515	kinetochore binding	5.32e-03	1.00e+00	7.553	1	2	4
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	5.36e-03	1.00e+00	4.161	2	5	84
GO:0004521	endoribonuclease activity	6.64e-03	1.00e+00	7.231	1	1	5
GO:0008610	lipid biosynthetic process	6.64e-03	1.00e+00	7.231	1	1	5
GO:0010458	exit from mitosis	6.64e-03	1.00e+00	7.231	1	2	5
GO:0006398	histone mRNA 3'-end processing	6.64e-03	1.00e+00	7.231	1	1	5
GO:0005828	kinetochore microtubule	6.64e-03	1.00e+00	7.231	1	1	5
GO:0070934	CRD-mediated mRNA stabilization	6.64e-03	1.00e+00	7.231	1	2	5
GO:0071204	histone pre-mRNA 3'end processing complex	6.64e-03	1.00e+00	7.231	1	1	5
GO:0031023	microtubule organizing center organization	6.64e-03	1.00e+00	7.231	1	1	5
GO:0042754	negative regulation of circadian rhythm	7.96e-03	1.00e+00	6.968	1	2	6
GO:0046974	histone methyltransferase activity (H3-K9 specific)	7.96e-03	1.00e+00	6.968	1	1	6
GO:0070937	CRD-mediated mRNA stability complex	7.96e-03	1.00e+00	6.968	1	2	6
GO:0007140	male meiosis	9.28e-03	1.00e+00	6.746	1	1	7
GO:0008409	5'-3' exonuclease activity	9.28e-03	1.00e+00	6.746	1	2	7
GO:0051292	nuclear pore complex assembly	1.06e-02	1.00e+00	6.553	1	4	8
GO:0071949	FAD binding	1.06e-02	1.00e+00	6.553	1	1	8
GO:0034453	microtubule anchoring	1.19e-02	1.00e+00	6.383	1	1	9
GO:0031080	nuclear pore outer ring	1.19e-02	1.00e+00	6.383	1	2	9
GO:0006379	mRNA cleavage	1.19e-02	1.00e+00	6.383	1	2	9
GO:0001522	pseudouridine synthesis	1.19e-02	1.00e+00	6.383	1	1	9
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	1.19e-02	1.00e+00	6.383	1	3	9
GO:0008143	poly(A) binding	1.32e-02	1.00e+00	6.231	1	2	10
GO:0001578	microtubule bundle formation	1.32e-02	1.00e+00	6.231	1	2	10
GO:0009982	pseudouridine synthase activity	1.32e-02	1.00e+00	6.231	1	1	10
GO:0051010	microtubule plus-end binding	1.46e-02	1.00e+00	6.094	1	2	11
GO:0007026	negative regulation of microtubule depolymerization	1.46e-02	1.00e+00	6.094	1	2	11
GO:0007020	microtubule nucleation	1.46e-02	1.00e+00	6.094	1	1	11
GO:0016409	palmitoyltransferase activity	1.59e-02	1.00e+00	5.968	1	1	12
GO:0018345	protein palmitoylation	1.98e-02	1.00e+00	5.646	1	1	15
GO:0031463	Cul3-RING ubiquitin ligase complex	2.11e-02	1.00e+00	5.553	1	1	16
GO:0005782	peroxisomal matrix	2.11e-02	1.00e+00	5.553	1	1	16
GO:0019706	protein-cysteine S-palmitoyltransferase activity	2.24e-02	1.00e+00	5.466	1	1	17
GO:0043022	ribosome binding	2.24e-02	1.00e+00	5.466	1	2	17
GO:0001227	RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription	2.24e-02	1.00e+00	5.466	1	2	17
GO:0006378	mRNA polyadenylation	2.37e-02	1.00e+00	5.383	1	3	18
GO:0005654	nucleoplasm	2.38e-02	1.00e+00	1.778	4	68	876
GO:0007163	establishment or maintenance of cell polarity	2.63e-02	1.00e+00	5.231	1	1	20
GO:0071346	cellular response to interferon-gamma	2.63e-02	1.00e+00	5.231	1	2	20
GO:0005720	nuclear heterochromatin	2.63e-02	1.00e+00	5.231	1	3	20
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	2.76e-02	1.00e+00	5.161	1	2	21
GO:0010467	gene expression	3.10e-02	1.00e+00	2.075	3	49	535
GO:0005881	cytoplasmic microtubule	3.15e-02	1.00e+00	4.968	1	3	24
GO:0005876	spindle microtubule	3.15e-02	1.00e+00	4.968	1	4	24
GO:0008033	tRNA processing	3.28e-02	1.00e+00	4.909	1	2	25
GO:0000976	transcription regulatory region sequence-specific DNA binding	3.28e-02	1.00e+00	4.909	1	3	25
GO:0030145	manganese ion binding	3.41e-02	1.00e+00	4.853	1	3	26
GO:0005778	peroxisomal membrane	3.79e-02	1.00e+00	4.695	1	3	29
GO:0017148	negative regulation of translation	4.31e-02	1.00e+00	4.509	1	5	33
GO:0000910	cytokinesis	4.31e-02	1.00e+00	4.509	1	2	33
GO:0000226	microtubule cytoskeleton organization	4.69e-02	1.00e+00	4.383	1	1	36
GO:0042787	protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.82e-02	1.00e+00	4.344	1	2	37
GO:0048511	rhythmic process	4.95e-02	1.00e+00	4.305	1	5	38
GO:0006396	RNA processing	5.20e-02	1.00e+00	4.231	1	4	40
GO:0000775	chromosome, centromeric region	5.33e-02	1.00e+00	4.195	1	6	41
GO:0006406	mRNA export from nucleus	5.71e-02	1.00e+00	4.094	1	7	44
GO:0051028	mRNA transport	6.08e-02	1.00e+00	3.998	1	5	47
GO:0051301	cell division	6.33e-02	1.00e+00	3.938	1	2	49
GO:0000278	mitotic cell cycle	6.36e-02	1.00e+00	2.258	2	28	314
GO:0005777	peroxisome	6.46e-02	1.00e+00	3.909	1	2	50
GO:0005643	nuclear pore	6.58e-02	1.00e+00	3.881	1	12	51
GO:0016020	membrane	6.65e-02	1.00e+00	1.316	4	56	1207
GO:0005730	nucleolus	6.82e-02	1.00e+00	1.304	4	74	1217
GO:0000776	kinetochore	7.08e-02	1.00e+00	3.772	1	8	55
GO:0006338	chromatin remodeling	7.08e-02	1.00e+00	3.772	1	7	55
GO:0006366	transcription from RNA polymerase II promoter	7.36e-02	1.00e+00	2.139	2	23	341
GO:0071013	catalytic step 2 spliceosome	7.83e-02	1.00e+00	3.622	1	5	61
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	8.07e-02	1.00e+00	3.576	1	2	63
GO:0044822	poly(A) RNA binding	8.42e-02	1.00e+00	1.496	3	45	799
GO:0016363	nuclear matrix	9.30e-02	1.00e+00	3.363	1	10	73
GO:0001649	osteoblast differentiation	9.42e-02	1.00e+00	3.344	1	5	74
GO:0071456	cellular response to hypoxia	9.66e-02	1.00e+00	3.305	1	2	76
GO:0005938	cell cortex	9.79e-02	1.00e+00	3.286	1	6	77
GO:0003690	double-stranded DNA binding	1.05e-01	1.00e+00	3.178	1	6	83
GO:0044255	cellular lipid metabolic process	1.12e-01	1.00e+00	3.077	1	2	89
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	1.21e-01	1.00e+00	1.720	2	29	456
GO:0000086	G2/M transition of mitotic cell cycle	1.22e-01	1.00e+00	2.953	1	7	97
GO:0008017	microtubule binding	1.22e-01	1.00e+00	2.953	1	9	97
GO:0000287	magnesium ion binding	1.43e-01	1.00e+00	2.707	1	4	115
GO:0003924	GTPase activity	1.47e-01	1.00e+00	2.658	1	7	119
GO:0000082	G1/S transition of mitotic cell cycle	1.54e-01	1.00e+00	2.587	1	4	125
GO:0031965	nuclear membrane	1.60e-01	1.00e+00	2.531	1	8	130
GO:0006184	GTP catabolic process	1.60e-01	1.00e+00	2.531	1	7	130
GO:0005622	intracellular	1.77e-01	1.00e+00	2.373	1	2	145
GO:0016071	mRNA metabolic process	2.04e-01	1.00e+00	2.144	1	10	170
GO:0000166	nucleotide binding	2.11e-01	1.00e+00	2.094	1	13	176
GO:0006412	translation	2.13e-01	1.00e+00	2.077	1	12	178
GO:0016567	protein ubiquitination	2.23e-01	1.00e+00	1.998	1	14	188
GO:0016070	RNA metabolic process	2.23e-01	1.00e+00	1.998	1	10	188
GO:0005525	GTP binding	2.33e-01	1.00e+00	1.931	1	12	197
GO:0015031	protein transport	2.39e-01	1.00e+00	1.888	1	10	203
GO:0030154	cell differentiation	2.40e-01	1.00e+00	1.881	1	5	204
GO:0008270	zinc ion binding	2.52e-01	1.00e+00	1.047	2	39	727
GO:0005813	centrosome	2.53e-01	1.00e+00	1.791	1	10	217
GO:0043231	intracellular membrane-bounded organelle	2.54e-01	1.00e+00	1.785	1	8	218
GO:0007411	axon guidance	2.74e-01	1.00e+00	1.664	1	8	237
GO:0003682	chromatin binding	2.88e-01	1.00e+00	1.576	1	15	252
GO:0055114	oxidation-reduction process	3.41e-01	1.00e+00	1.286	1	9	308
GO:0045892	negative regulation of transcription, DNA-templated	3.49e-01	1.00e+00	1.245	1	17	317
GO:0044267	cellular protein metabolic process	3.80e-01	1.00e+00	1.094	1	14	352
GO:0005783	endoplasmic reticulum	4.04e-01	1.00e+00	0.979	1	12	381
GO:0006351	transcription, DNA-templated	4.28e-01	1.00e+00	0.482	2	47	1076
GO:0005794	Golgi apparatus	4.32e-01	1.00e+00	0.856	1	6	415
GO:0005829	cytosol	4.35e-01	1.00e+00	0.335	3	88	1787
GO:0016032	viral process	4.42e-01	1.00e+00	0.811	1	30	428
GO:0005634	nucleus	4.45e-01	1.00e+00	0.210	5	158	3246
GO:0005515	protein binding	4.92e-01	1.00e+00	0.128	6	198	4124
GO:0003700	sequence-specific DNA binding transcription factor activity	5.50e-01	1.00e+00	0.368	1	22	582
GO:0005739	mitochondrion	5.97e-01	1.00e+00	0.189	1	32	659
GO:0006355	regulation of transcription, DNA-templated	6.28e-01	1.00e+00	0.071	1	31	715
GO:0070062	extracellular vesicular exosome	6.69e-01	1.00e+00	-0.127	2	51	1641
GO:0044281	small molecule metabolic process	6.91e-01	1.00e+00	-0.168	1	35	844
GO:0005524	ATP binding	7.12e-01	1.00e+00	-0.248	1	37	892
GO:0046872	metal ion binding	7.30e-01	1.00e+00	-0.314	1	24	934
GO:0003677	DNA binding	7.35e-01	1.00e+00	-0.334	1	52	947
GO:0016021	integral component of membrane	8.90e-01	1.00e+00	-1.023	1	19	1526
GO:0005737	cytoplasm	9.03e-01	1.00e+00	-0.810	2	127	2633
GO:0005886	plasma membrane	9.28e-01	1.00e+00	-1.248	1	46	1784

chia-Fav

reg-snw-150962

Statistics

Genes (13)

Interactions (12)

Related GO terms (145)