reg-snw-54471

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.203	2.76e-07	4.58e-02	3.48e-02

chia-screen-data-Fav-reg-snw-54471 subnetwork

Genes (7)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
CBLL1	79872	9	-1.897	2.445	38	TF	-	-
TPR	7175	10	-2.638	2.445	36	TF	Yes	Yes
NCBP1	4686	41	-2.510	2.459	44	-	Yes	Yes
PRDM14	63978	7	-3.797	2.412	147	TF	Yes	Yes
MED28	80306	8	-2.404	2.445	6	-	Yes	-
[ MIEF1 ]	54471	1	0.129	2.203	6	-	-	-
ARL4C	10123	2	-2.307	2.281	1	-	Yes	-

Interactions (6)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
NCBP1	4686	CBLL1	79872	pd	<	reg.ITFP.txt: no annot
ARL4C	10123	PRDM14	63978	pd	<	reg.pazar.txt: no annot
MIEF1	54471	PRDM14	63978	pd	<	reg.pazar.txt: no annot
CBLL1	79872	MED28	80306	pd	>	reg.ITFP.txt: no annot
NCBP1	4686	TPR	7175	pd	<	reg.ITFP.txt: no annot
MIEF1	54471	CBLL1	79872	pd	<	reg.ITFP.txt: no annot

Related GO terms (141)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0034972	histone H3-R26 methylation	7.17e-04	1.00e+00	10.446	1	1	1
GO:1901673	regulation of spindle assembly involved in mitosis	7.17e-04	1.00e+00	10.446	1	1	1
GO:0043578	nuclear matrix organization	7.17e-04	1.00e+00	10.446	1	1	1
GO:0010965	regulation of mitotic sister chromatid separation	7.17e-04	1.00e+00	10.446	1	1	1
GO:0001827	inner cell mass cell fate commitment	7.17e-04	1.00e+00	10.446	1	1	1
GO:0006404	RNA import into nucleus	7.17e-04	1.00e+00	10.446	1	1	1
GO:0031453	positive regulation of heterochromatin assembly	7.17e-04	1.00e+00	10.446	1	1	1
GO:0000189	MAPK import into nucleus	1.43e-03	1.00e+00	9.446	1	1	2
GO:0031990	mRNA export from nucleus in response to heat stress	1.43e-03	1.00e+00	9.446	1	1	2
GO:0042306	regulation of protein import into nucleus	1.43e-03	1.00e+00	9.446	1	1	2
GO:0005846	nuclear cap binding complex	1.43e-03	1.00e+00	9.446	1	1	2
GO:0070840	dynein complex binding	1.43e-03	1.00e+00	9.446	1	1	2
GO:0046832	negative regulation of RNA export from nucleus	1.43e-03	1.00e+00	9.446	1	1	2
GO:0006405	RNA export from nucleus	2.15e-03	1.00e+00	8.861	1	1	3
GO:0010793	regulation of mRNA export from nucleus	2.15e-03	1.00e+00	8.861	1	1	3
GO:0005515	protein binding	2.39e-03	1.00e+00	1.244	7	198	4124
GO:0051151	negative regulation of smooth muscle cell differentiation	2.86e-03	1.00e+00	8.446	1	1	4
GO:0045292	mRNA cis splicing, via spliceosome	2.86e-03	1.00e+00	8.446	1	1	4
GO:0044030	regulation of DNA methylation	2.86e-03	1.00e+00	8.446	1	1	4
GO:0030718	germ-line stem cell maintenance	2.86e-03	1.00e+00	8.446	1	1	4
GO:0031442	positive regulation of mRNA 3'-end processing	2.86e-03	1.00e+00	8.446	1	1	4
GO:0006999	nuclear pore organization	2.86e-03	1.00e+00	8.446	1	1	4
GO:0070849	response to epidermal growth factor	2.86e-03	1.00e+00	8.446	1	1	4
GO:0044615	nuclear pore nuclear basket	2.86e-03	1.00e+00	8.446	1	1	4
GO:0046825	regulation of protein export from nucleus	3.58e-03	1.00e+00	8.124	1	1	5
GO:0043495	protein anchor	3.58e-03	1.00e+00	8.124	1	1	5
GO:0090267	positive regulation of mitotic cell cycle spindle assembly checkpoint	4.29e-03	1.00e+00	7.861	1	1	6
GO:0090141	positive regulation of mitochondrial fission	4.29e-03	1.00e+00	7.861	1	1	6
GO:0040037	negative regulation of fibroblast growth factor receptor signaling pathway	4.29e-03	1.00e+00	7.861	1	1	6
GO:0000339	RNA cap binding	5.01e-03	1.00e+00	7.639	1	1	7
GO:0005868	cytoplasmic dynein complex	5.01e-03	1.00e+00	7.639	1	1	7
GO:0005845	mRNA cap binding complex	5.72e-03	1.00e+00	7.446	1	1	8
GO:0042405	nuclear inclusion body	5.72e-03	1.00e+00	7.446	1	1	8
GO:0051292	nuclear pore complex assembly	5.72e-03	1.00e+00	7.446	1	4	8
GO:0035457	cellular response to interferon-alpha	5.72e-03	1.00e+00	7.446	1	1	8
GO:0032456	endocytic recycling	5.72e-03	1.00e+00	7.446	1	2	8
GO:0090314	positive regulation of protein targeting to membrane	6.44e-03	1.00e+00	7.276	1	2	9
GO:0006379	mRNA cleavage	6.44e-03	1.00e+00	7.276	1	2	9
GO:0045947	negative regulation of translational initiation	6.44e-03	1.00e+00	7.276	1	1	9
GO:0008053	mitochondrial fusion	7.15e-03	1.00e+00	7.124	1	1	10
GO:0040029	regulation of gene expression, epigenetic	7.15e-03	1.00e+00	7.124	1	1	10
GO:0051019	mitogen-activated protein kinase binding	7.86e-03	1.00e+00	6.987	1	1	11
GO:0008334	histone mRNA metabolic process	7.86e-03	1.00e+00	6.987	1	1	11
GO:0090316	positive regulation of intracellular protein transport	7.86e-03	1.00e+00	6.987	1	1	11
GO:0045807	positive regulation of endocytosis	7.86e-03	1.00e+00	6.987	1	1	11
GO:0005487	nucleocytoplasmic transporter activity	7.86e-03	1.00e+00	6.987	1	2	11
GO:0000266	mitochondrial fission	7.86e-03	1.00e+00	6.987	1	2	11
GO:0046827	positive regulation of protein export from nucleus	7.86e-03	1.00e+00	6.987	1	1	11
GO:0042307	positive regulation of protein import into nucleus	8.57e-03	1.00e+00	6.861	1	3	12
GO:0034399	nuclear periphery	8.57e-03	1.00e+00	6.861	1	3	12
GO:0048873	homeostasis of number of cells within a tissue	1.00e-02	1.00e+00	6.639	1	2	14
GO:0043014	alpha-tubulin binding	1.07e-02	1.00e+00	6.539	1	1	15
GO:0001708	cell fate specification	1.07e-02	1.00e+00	6.539	1	1	15
GO:0030864	cortical actin cytoskeleton	1.14e-02	1.00e+00	6.446	1	1	16
GO:0006611	protein export from nucleus	1.28e-02	1.00e+00	6.276	1	1	18
GO:0031047	gene silencing by RNA	1.28e-02	1.00e+00	6.276	1	2	18
GO:0009566	fertilization	1.28e-02	1.00e+00	6.276	1	1	18
GO:0043531	ADP binding	1.43e-02	1.00e+00	6.124	1	2	20
GO:0015631	tubulin binding	1.43e-02	1.00e+00	6.124	1	1	20
GO:0072686	mitotic spindle	1.43e-02	1.00e+00	6.124	1	2	20
GO:0034660	ncRNA metabolic process	1.43e-02	1.00e+00	6.124	1	1	20
GO:0031647	regulation of protein stability	1.50e-02	1.00e+00	6.054	1	2	21
GO:0006606	protein import into nucleus	1.57e-02	1.00e+00	5.987	1	3	22
GO:0000387	spliceosomal snRNP assembly	1.57e-02	1.00e+00	5.987	1	1	22
GO:0034605	cellular response to heat	1.57e-02	1.00e+00	5.987	1	1	22
GO:0007281	germ cell development	1.57e-02	1.00e+00	5.987	1	1	22
GO:0007162	negative regulation of cell adhesion	1.71e-02	1.00e+00	5.861	1	2	24
GO:0006370	7-methylguanosine mRNA capping	1.71e-02	1.00e+00	5.861	1	5	24
GO:0016592	mediator complex	1.78e-02	1.00e+00	5.802	1	6	25
GO:0010827	regulation of glucose transport	1.78e-02	1.00e+00	5.802	1	7	25
GO:0007094	mitotic spindle assembly checkpoint	1.78e-02	1.00e+00	5.802	1	4	25
GO:0031072	heat shock protein binding	1.99e-02	1.00e+00	5.639	1	1	28
GO:0006446	regulation of translational initiation	2.06e-02	1.00e+00	5.588	1	2	29
GO:0019898	extrinsic component of membrane	2.13e-02	1.00e+00	5.539	1	1	30
GO:0008168	methyltransferase activity	2.13e-02	1.00e+00	5.539	1	2	30
GO:0007077	mitotic nuclear envelope disassembly	2.27e-02	1.00e+00	5.446	1	9	32
GO:0019003	GDP binding	2.41e-02	1.00e+00	5.359	1	2	34
GO:0042802	identical protein binding	2.44e-02	1.00e+00	2.978	2	15	354
GO:0000902	cell morphogenesis	2.48e-02	1.00e+00	5.317	1	5	35
GO:0050434	positive regulation of viral transcription	2.48e-02	1.00e+00	5.317	1	5	35
GO:0031124	mRNA 3'-end processing	2.48e-02	1.00e+00	5.317	1	4	35
GO:0008645	hexose transport	2.55e-02	1.00e+00	5.276	1	8	36
GO:0030175	filopodium	2.62e-02	1.00e+00	5.237	1	1	37
GO:0006369	termination of RNA polymerase II transcription	2.69e-02	1.00e+00	5.198	1	5	38
GO:0019827	stem cell maintenance	2.76e-02	1.00e+00	5.161	1	4	39
GO:0006406	mRNA export from nucleus	3.11e-02	1.00e+00	4.987	1	7	44
GO:0015758	glucose transport	3.39e-02	1.00e+00	4.861	1	8	48
GO:0000151	ubiquitin ligase complex	3.39e-02	1.00e+00	4.861	1	4	48
GO:0016032	viral process	3.48e-02	1.00e+00	2.705	2	30	428
GO:0005777	peroxisome	3.53e-02	1.00e+00	4.802	1	2	50
GO:0005643	nuclear pore	3.60e-02	1.00e+00	4.774	1	12	51
GO:0006368	transcription elongation from RNA polymerase II promoter	3.67e-02	1.00e+00	4.746	1	8	52
GO:0000776	kinetochore	3.88e-02	1.00e+00	4.665	1	8	55
GO:0003729	mRNA binding	4.02e-02	1.00e+00	4.613	1	4	57
GO:0016337	single organismal cell-cell adhesion	4.36e-02	1.00e+00	4.492	1	3	62
GO:0005741	mitochondrial outer membrane	5.53e-02	1.00e+00	4.142	1	2	79
GO:0030529	ribonucleoprotein complex	5.73e-02	1.00e+00	4.088	1	5	82
GO:0005215	transporter activity	5.73e-02	1.00e+00	4.088	1	5	82
GO:0005635	nuclear envelope	5.80e-02	1.00e+00	4.071	1	6	83
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	5.87e-02	1.00e+00	4.054	1	5	84
GO:0030335	positive regulation of cell migration	7.02e-02	1.00e+00	3.788	1	2	101
GO:0005739	mitochondrion	7.61e-02	1.00e+00	2.082	2	32	659
GO:0003924	GTPase activity	8.23e-02	1.00e+00	3.551	1	7	119
GO:0006355	regulation of transcription, DNA-templated	8.79e-02	1.00e+00	1.964	2	31	715
GO:0000398	mRNA splicing, via spliceosome	8.83e-02	1.00e+00	3.446	1	15	128
GO:0031965	nuclear membrane	8.96e-02	1.00e+00	3.424	1	8	130
GO:0006184	GTP catabolic process	8.96e-02	1.00e+00	3.424	1	7	130
GO:0016874	ligase activity	1.00e-01	1.00e+00	3.256	1	11	146
GO:0044822	poly(A) RNA binding	1.07e-01	1.00e+00	1.804	2	45	799
GO:0008380	RNA splicing	1.12e-01	1.00e+00	3.080	1	21	165
GO:0007067	mitotic nuclear division	1.12e-01	1.00e+00	3.080	1	9	165
GO:0016071	mRNA metabolic process	1.16e-01	1.00e+00	3.037	1	10	170
GO:0019221	cytokine-mediated signaling pathway	1.17e-01	1.00e+00	3.020	1	10	172
GO:0007264	small GTPase mediated signal transduction	1.18e-01	1.00e+00	3.003	1	8	174
GO:0004842	ubiquitin-protein transferase activity	1.22e-01	1.00e+00	2.962	1	17	179
GO:0003779	actin binding	1.22e-01	1.00e+00	2.962	1	3	179
GO:0005654	nucleoplasm	1.25e-01	1.00e+00	1.671	2	68	876
GO:0005975	carbohydrate metabolic process	1.26e-01	1.00e+00	2.907	1	10	186
GO:0016567	protein ubiquitination	1.27e-01	1.00e+00	2.891	1	14	188
GO:0016070	RNA metabolic process	1.27e-01	1.00e+00	2.891	1	10	188
GO:0005525	GTP binding	1.33e-01	1.00e+00	2.824	1	12	197
GO:0003723	RNA binding	1.64e-01	1.00e+00	2.498	1	22	247
GO:0003682	chromatin binding	1.67e-01	1.00e+00	2.469	1	15	252
GO:0005634	nucleus	1.72e-01	1.00e+00	0.782	4	158	3246
GO:0006351	transcription, DNA-templated	1.75e-01	1.00e+00	1.375	2	47	1076
GO:0000278	mitotic cell cycle	2.05e-01	1.00e+00	2.151	1	28	314
GO:0055085	transmembrane transport	2.13e-01	1.00e+00	2.084	1	13	329
GO:0006366	transcription from RNA polymerase II promoter	2.20e-01	1.00e+00	2.032	1	23	341
GO:0042803	protein homodimerization activity	2.69e-01	1.00e+00	1.705	1	13	428
GO:0005737	cytoplasm	2.85e-01	1.00e+00	0.669	3	127	2633
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	2.85e-01	1.00e+00	1.613	1	29	456
GO:0010467	gene expression	3.26e-01	1.00e+00	1.383	1	49	535
GO:0005886	plasma membrane	3.75e-01	1.00e+00	0.645	2	46	1784
GO:0008270	zinc ion binding	4.18e-01	1.00e+00	0.940	1	39	727
GO:0044281	small molecule metabolic process	4.69e-01	1.00e+00	0.725	1	35	844
GO:0046872	metal ion binding	5.05e-01	1.00e+00	0.579	1	24	934
GO:0003677	DNA binding	5.10e-01	1.00e+00	0.559	1	52	947
GO:0016020	membrane	6.03e-01	1.00e+00	0.209	1	56	1207
GO:0005730	nucleolus	6.06e-01	1.00e+00	0.197	1	74	1217
GO:0016021	integral component of membrane	6.96e-01	1.00e+00	-0.129	1	19	1526
GO:0005829	cytosol	7.57e-01	1.00e+00	-0.357	1	88	1787

chia-Fav

reg-snw-54471

Statistics

Genes (7)

Interactions (6)

Related GO terms (141)