reg-snw-9782

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.329	6.03e-08	2.02e-02	1.62e-02

chia-screen-data-Fav-reg-snw-9782 subnetwork

Genes (9)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
FOXJ3	22887	15	-2.407	2.369	87	TF	Yes	Yes
SYNCRIP	10492	42	-2.401	2.503	144	TF	Yes	Yes
KIAA1551	55196	6	-1.852	2.369	35	-	-	-
ETF1	2107	35	-2.829	2.503	6	-	Yes	Yes
CPSF3	51692	43	-2.686	2.503	31	-	Yes	Yes
HNRNPU	3192	39	-2.869	2.644	33	-	Yes	-
CLASP1	23332	10	-2.365	2.459	39	TF	Yes	-
[ MATR3 ]	9782	3	-1.556	2.329	47	TF	-	-
PAPOLA	10914	9	-1.996	2.455	19	-	-	-

Interactions (8)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
FOXJ3	22887	KIAA1551	55196	pd	>	reg.ITFP.txt: no annot
SYNCRIP	10492	PAPOLA	10914	pd	>	reg.ITFP.txt: no annot
PAPOLA	10914	CLASP1	23332	pd	<	reg.ITFP.txt: no annot
MATR3	9782	KIAA1551	55196	pd	>	reg.ITFP.txt: no annot
ETF1	2107	SYNCRIP	10492	pd	<	reg.ITFP.txt: no annot
HNRNPU	3192	MATR3	9782	pd	<	reg.ITFP.txt: no annot
MATR3	9782	PAPOLA	10914	pd	>	reg.ITFP.txt: no annot
SYNCRIP	10492	CPSF3	51692	pd	>	reg.ITFP.txt: no annot

Related GO terms (94)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0003723	RNA binding	1.15e-06	1.13e-02	4.457	5	22	247
GO:0000398	mRNA splicing, via spliceosome	3.37e-06	3.29e-02	5.083	4	15	128
GO:0070934	CRD-mediated mRNA stabilization	7.54e-06	7.36e-02	8.762	2	2	5
GO:0008380	RNA splicing	9.27e-06	9.05e-02	4.717	4	21	165
GO:0070937	CRD-mediated mRNA stability complex	1.13e-05	1.10e-01	8.499	2	2	6
GO:0030529	ribonucleoprotein complex	4.62e-05	4.51e-01	5.311	3	5	82
GO:0031124	mRNA 3'-end processing	4.42e-04	1.00e+00	5.954	2	4	35
GO:0006369	termination of RNA polymerase II transcription	5.22e-04	1.00e+00	5.836	2	5	38
GO:0006396	RNA processing	5.78e-04	1.00e+00	5.762	2	4	40
GO:0010467	gene expression	9.00e-04	1.00e+00	3.020	4	49	535
GO:0016149	translation release factor activity, codon specific	9.22e-04	1.00e+00	10.083	1	1	1
GO:0008079	translation termination factor activity	9.22e-04	1.00e+00	10.083	1	1	1
GO:0031592	centrosomal corona	9.22e-04	1.00e+00	10.083	1	1	1
GO:0071013	catalytic step 2 spliceosome	1.34e-03	1.00e+00	5.153	2	5	61
GO:0031111	negative regulation of microtubule polymerization or depolymerization	1.84e-03	1.00e+00	9.083	1	1	2
GO:0051294	establishment of spindle orientation	1.84e-03	1.00e+00	9.083	1	1	2
GO:0030981	cortical microtubule cytoskeleton	1.84e-03	1.00e+00	9.083	1	1	2
GO:0003747	translation release factor activity	1.84e-03	1.00e+00	9.083	1	2	2
GO:0001649	osteoblast differentiation	1.97e-03	1.00e+00	4.874	2	5	74
GO:0006449	regulation of translational termination	3.68e-03	1.00e+00	8.083	1	1	4
GO:0043631	RNA polyadenylation	3.68e-03	1.00e+00	8.083	1	1	4
GO:0097452	GAIT complex	3.68e-03	1.00e+00	8.083	1	2	4
GO:0043515	kinetochore binding	3.68e-03	1.00e+00	8.083	1	2	4
GO:0004652	polynucleotide adenylyltransferase activity	3.68e-03	1.00e+00	8.083	1	1	4
GO:0044822	poly(A) RNA binding	4.01e-03	1.00e+00	2.441	4	45	799
GO:0004521	endoribonuclease activity	4.60e-03	1.00e+00	7.762	1	1	5
GO:0010458	exit from mitosis	4.60e-03	1.00e+00	7.762	1	2	5
GO:0006398	histone mRNA 3'-end processing	4.60e-03	1.00e+00	7.762	1	1	5
GO:0071204	histone pre-mRNA 3'end processing complex	4.60e-03	1.00e+00	7.762	1	1	5
GO:0005828	kinetochore microtubule	4.60e-03	1.00e+00	7.762	1	1	5
GO:0031023	microtubule organizing center organization	4.60e-03	1.00e+00	7.762	1	1	5
GO:0005654	nucleoplasm	5.61e-03	1.00e+00	2.309	4	68	876
GO:0008409	5'-3' exonuclease activity	6.44e-03	1.00e+00	7.276	1	2	7
GO:0034453	microtubule anchoring	8.27e-03	1.00e+00	6.914	1	1	9
GO:0006379	mRNA cleavage	8.27e-03	1.00e+00	6.914	1	2	9
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	8.27e-03	1.00e+00	6.914	1	3	9
GO:0008143	poly(A) binding	9.18e-03	1.00e+00	6.762	1	2	10
GO:0001578	microtubule bundle formation	9.18e-03	1.00e+00	6.762	1	2	10
GO:0051010	microtubule plus-end binding	1.01e-02	1.00e+00	6.624	1	2	11
GO:0007026	negative regulation of microtubule depolymerization	1.01e-02	1.00e+00	6.624	1	2	11
GO:0007020	microtubule nucleation	1.01e-02	1.00e+00	6.624	1	1	11
GO:0006479	protein methylation	1.01e-02	1.00e+00	6.624	1	2	11
GO:0000166	nucleotide binding	1.07e-02	1.00e+00	3.624	2	13	176
GO:0043022	ribosome binding	1.56e-02	1.00e+00	5.996	1	2	17
GO:0006378	mRNA polyadenylation	1.65e-02	1.00e+00	5.914	1	3	18
GO:0036464	cytoplasmic ribonucleoprotein granule	1.74e-02	1.00e+00	5.836	1	1	19
GO:0016020	membrane	1.75e-02	1.00e+00	1.846	4	56	1207
GO:0071346	cellular response to interferon-gamma	1.83e-02	1.00e+00	5.762	1	2	20
GO:0005637	nuclear inner membrane	1.83e-02	1.00e+00	5.762	1	1	20
GO:0007163	establishment or maintenance of cell polarity	1.83e-02	1.00e+00	5.762	1	1	20
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	1.92e-02	1.00e+00	5.691	1	2	21
GO:0005881	cytoplasmic microtubule	2.19e-02	1.00e+00	5.499	1	3	24
GO:0005876	spindle microtubule	2.19e-02	1.00e+00	5.499	1	4	24
GO:0030145	manganese ion binding	2.37e-02	1.00e+00	5.383	1	3	26
GO:0017148	negative regulation of translation	3.00e-02	1.00e+00	5.039	1	5	33
GO:0000226	microtubule cytoskeleton organization	3.27e-02	1.00e+00	4.914	1	1	36
GO:0006366	transcription from RNA polymerase II promoter	3.72e-02	1.00e+00	2.670	2	23	341
GO:0006406	mRNA export from nucleus	3.98e-02	1.00e+00	4.624	1	7	44
GO:0051301	cell division	4.43e-02	1.00e+00	4.469	1	2	49
GO:0000776	kinetochore	4.96e-02	1.00e+00	4.302	1	8	55
GO:0000777	condensed chromosome kinetochore	5.13e-02	1.00e+00	4.251	1	6	57
GO:0006415	translational termination	5.66e-02	1.00e+00	4.106	1	2	63
GO:0016363	nuclear matrix	6.53e-02	1.00e+00	3.894	1	10	73
GO:0005938	cell cortex	6.88e-02	1.00e+00	3.817	1	6	77
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	7.48e-02	1.00e+00	3.691	1	5	84
GO:0000086	G2/M transition of mitotic cell cycle	8.60e-02	1.00e+00	3.484	1	7	97
GO:0008017	microtubule binding	8.60e-02	1.00e+00	3.484	1	9	97
GO:0005198	structural molecule activity	8.94e-02	1.00e+00	3.425	1	4	101
GO:0000287	magnesium ion binding	1.01e-01	1.00e+00	3.238	1	4	115
GO:0005515	protein binding	1.26e-01	1.00e+00	0.659	6	198	4124
GO:0005634	nucleus	1.43e-01	1.00e+00	0.741	5	158	3246
GO:0016071	mRNA metabolic process	1.46e-01	1.00e+00	2.674	1	10	170
GO:0006412	translation	1.53e-01	1.00e+00	2.608	1	12	178
GO:0016070	RNA metabolic process	1.61e-01	1.00e+00	2.529	1	10	188
GO:0005813	centrosome	1.83e-01	1.00e+00	2.322	1	10	217
GO:0005524	ATP binding	1.96e-01	1.00e+00	1.283	2	37	892
GO:0007411	axon guidance	1.98e-01	1.00e+00	2.195	1	8	237
GO:0043565	sequence-specific DNA binding	2.27e-01	1.00e+00	1.980	1	8	275
GO:0009986	cell surface	2.38e-01	1.00e+00	1.899	1	5	291
GO:0000278	mitotic cell cycle	2.55e-01	1.00e+00	1.789	1	28	314
GO:0044267	cellular protein metabolic process	2.81e-01	1.00e+00	1.624	1	14	352
GO:0005783	endoplasmic reticulum	3.01e-01	1.00e+00	1.510	1	12	381
GO:0005730	nucleolus	3.11e-01	1.00e+00	0.834	2	74	1217
GO:0005794	Golgi apparatus	3.24e-01	1.00e+00	1.387	1	6	415
GO:0016032	viral process	3.32e-01	1.00e+00	1.342	1	30	428
GO:0003700	sequence-specific DNA binding transcription factor activity	4.25e-01	1.00e+00	0.899	1	22	582
GO:0006355	regulation of transcription, DNA-templated	4.96e-01	1.00e+00	0.602	1	31	715
GO:0008270	zinc ion binding	5.02e-01	1.00e+00	0.578	1	39	727
GO:0005829	cytosol	5.11e-01	1.00e+00	0.280	2	88	1787
GO:0046872	metal ion binding	5.96e-01	1.00e+00	0.216	1	24	934
GO:0003677	DNA binding	6.01e-01	1.00e+00	0.196	1	52	947
GO:0006351	transcription, DNA-templated	6.50e-01	1.00e+00	0.012	1	47	1076
GO:0005737	cytoplasm	7.45e-01	1.00e+00	-0.279	2	127	2633
GO:0070062	extracellular vesicular exosome	8.09e-01	1.00e+00	-0.597	1	51	1641

chia-Fav

reg-snw-9782

Statistics

Genes (9)

Interactions (8)

Related GO terms (94)