reg-snw-2335

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.280	1.11e-07	2.82e-02	2.21e-02

chia-screen-data-Fav-reg-snw-2335 subnetwork

Genes (7)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
TAF2	6873	2	-2.384	2.380	6	TF	Yes	Yes
NFIC	4782	2	-1.844	2.280	44	TF	-	-
HNRNPU	3192	39	-2.869	2.644	33	-	Yes	-
[ FN1 ]	2335	1	-1.380	2.280	49	-	-	-
MATR3	9782	3	-1.556	2.329	47	TF	-	-
PRDM14	63978	7	-3.797	2.412	147	TF	Yes	Yes
ACTA1	58	2	-2.128	2.280	11	-	Yes	-

Interactions (6)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
FN1	2335	TAF2	6873	pd	<	reg.ITFP.txt: no annot
FN1	2335	NFIC	4782	pd	<	reg.TRANSFAC.txt: no annot
FN1	2335	MATR3	9782	pd	<	reg.ITFP.txt: no annot
ACTA1	58	NFIC	4782	pd	<	reg.TRANSFAC.txt: no annot
NFIC	4782	PRDM14	63978	pd	<	reg.pazar.txt: no annot
HNRNPU	3192	MATR3	9782	pd	<	reg.ITFP.txt: no annot

Related GO terms (109)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0034972	histone H3-R26 methylation	7.17e-04	1.00e+00	10.446	1	1	1
GO:0001159	core promoter proximal region DNA binding	7.17e-04	1.00e+00	10.446	1	1	1
GO:0001827	inner cell mass cell fate commitment	7.17e-04	1.00e+00	10.446	1	1	1
GO:0072562	blood microparticle	1.39e-03	1.00e+00	5.106	2	4	81
GO:0043503	skeletal muscle fiber adaptation	1.43e-03	1.00e+00	9.446	1	1	2
GO:0033622	integrin activation	2.15e-03	1.00e+00	8.861	1	1	3
GO:0009991	response to extracellular stimulus	2.15e-03	1.00e+00	8.861	1	1	3
GO:0005865	striated muscle thin filament	2.15e-03	1.00e+00	8.861	1	1	3
GO:0007161	calcium-independent cell-matrix adhesion	2.15e-03	1.00e+00	8.861	1	1	3
GO:0030240	skeletal muscle thin filament assembly	2.86e-03	1.00e+00	8.446	1	1	4
GO:0044030	regulation of DNA methylation	2.86e-03	1.00e+00	8.446	1	1	4
GO:0030718	germ-line stem cell maintenance	2.86e-03	1.00e+00	8.446	1	1	4
GO:0070934	CRD-mediated mRNA stabilization	3.58e-03	1.00e+00	8.124	1	2	5
GO:0005577	fibrinogen complex	4.29e-03	1.00e+00	7.861	1	1	6
GO:0007044	cell-substrate junction assembly	4.29e-03	1.00e+00	7.861	1	1	6
GO:0070937	CRD-mediated mRNA stability complex	4.29e-03	1.00e+00	7.861	1	2	6
GO:0040037	negative regulation of fibroblast growth factor receptor signaling pathway	4.29e-03	1.00e+00	7.861	1	1	6
GO:0016504	peptidase activator activity	6.44e-03	1.00e+00	7.276	1	1	9
GO:0010226	response to lithium ion	6.44e-03	1.00e+00	7.276	1	2	9
GO:0005605	basal lamina	7.15e-03	1.00e+00	7.124	1	1	10
GO:0040029	regulation of gene expression, epigenetic	7.15e-03	1.00e+00	7.124	1	1	10
GO:0045773	positive regulation of axon extension	7.86e-03	1.00e+00	6.987	1	1	11
GO:0010952	positive regulation of peptidase activity	7.86e-03	1.00e+00	6.987	1	1	11
GO:0033276	transcription factor TFTC complex	7.86e-03	1.00e+00	6.987	1	3	11
GO:0048741	skeletal muscle fiber development	7.86e-03	1.00e+00	6.987	1	1	11
GO:0048545	response to steroid hormone	9.28e-03	1.00e+00	6.746	1	2	13
GO:0048873	homeostasis of number of cells within a tissue	1.00e-02	1.00e+00	6.639	1	2	14
GO:0001708	cell fate specification	1.07e-02	1.00e+00	6.539	1	1	15
GO:0017022	myosin binding	1.14e-02	1.00e+00	6.446	1	2	16
GO:0005669	transcription factor TFIID complex	1.28e-02	1.00e+00	6.276	1	3	18
GO:0009566	fertilization	1.28e-02	1.00e+00	6.276	1	1	18
GO:0018149	peptide cross-linking	1.28e-02	1.00e+00	6.276	1	1	18
GO:0030017	sarcomere	1.28e-02	1.00e+00	6.276	1	2	18
GO:0030049	muscle filament sliding	1.35e-02	1.00e+00	6.198	1	2	19
GO:0036464	cytoplasmic ribonucleoprotein granule	1.35e-02	1.00e+00	6.198	1	1	19
GO:0043531	ADP binding	1.43e-02	1.00e+00	6.124	1	2	20
GO:0005637	nuclear inner membrane	1.43e-02	1.00e+00	6.124	1	1	20
GO:0035987	endodermal cell differentiation	1.43e-02	1.00e+00	6.124	1	1	20
GO:0007281	germ cell development	1.57e-02	1.00e+00	5.987	1	1	22
GO:0006953	acute-phase response	1.71e-02	1.00e+00	5.861	1	2	24
GO:0034446	substrate adhesion-dependent cell spreading	1.78e-02	1.00e+00	5.802	1	2	25
GO:0005884	actin filament	1.92e-02	1.00e+00	5.691	1	1	27
GO:0008168	methyltransferase activity	2.13e-02	1.00e+00	5.539	1	2	30
GO:0014070	response to organic cyclic compound	2.41e-02	1.00e+00	5.359	1	2	34
GO:0016049	cell growth	2.48e-02	1.00e+00	5.317	1	1	35
GO:0000902	cell morphogenesis	2.48e-02	1.00e+00	5.317	1	5	35
GO:0031093	platelet alpha granule lumen	2.48e-02	1.00e+00	5.317	1	3	35
GO:0005515	protein binding	2.53e-02	1.00e+00	1.021	6	198	4124
GO:0008237	metallopeptidase activity	2.69e-02	1.00e+00	5.198	1	3	38
GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	2.69e-02	1.00e+00	5.198	1	2	38
GO:0042475	odontogenesis of dentin-containing tooth	2.83e-02	1.00e+00	5.124	1	2	40
GO:0006396	RNA processing	2.83e-02	1.00e+00	5.124	1	4	40
GO:0009611	response to wounding	2.90e-02	1.00e+00	5.088	1	2	41
GO:0009612	response to mechanical stimulus	3.25e-02	1.00e+00	4.922	1	2	46
GO:0001725	stress fiber	3.25e-02	1.00e+00	4.922	1	6	46
GO:0005518	collagen binding	3.32e-02	1.00e+00	4.891	1	2	47
GO:0002020	protease binding	3.53e-02	1.00e+00	4.802	1	3	50
GO:0006936	muscle contraction	3.81e-02	1.00e+00	4.691	1	5	54
GO:0071013	catalytic step 2 spliceosome	4.29e-02	1.00e+00	4.515	1	5	61
GO:0002576	platelet degranulation	4.36e-02	1.00e+00	4.492	1	3	62
GO:0005178	integrin binding	4.78e-02	1.00e+00	4.359	1	3	68
GO:0005200	structural constituent of cytoskeleton	4.78e-02	1.00e+00	4.359	1	2	68
GO:0008360	regulation of cell shape	4.91e-02	1.00e+00	4.317	1	3	70
GO:0016363	nuclear matrix	5.12e-02	1.00e+00	4.256	1	10	73
GO:0001649	osteoblast differentiation	5.19e-02	1.00e+00	4.237	1	5	74
GO:0030529	ribonucleoprotein complex	5.73e-02	1.00e+00	4.088	1	5	82
GO:0003690	double-stranded DNA binding	5.80e-02	1.00e+00	4.071	1	6	83
GO:0022617	extracellular matrix disassembly	5.94e-02	1.00e+00	4.037	1	2	85
GO:0008201	heparin binding	6.35e-02	1.00e+00	3.938	1	4	91
GO:0050900	leukocyte migration	6.35e-02	1.00e+00	3.938	1	2	91
GO:0006260	DNA replication	6.55e-02	1.00e+00	3.891	1	9	94
GO:0000086	G2/M transition of mitotic cell cycle	6.75e-02	1.00e+00	3.846	1	7	97
GO:0005198	structural molecule activity	7.02e-02	1.00e+00	3.788	1	4	101
GO:0045944	positive regulation of transcription from RNA polymerase II promoter	7.31e-02	1.00e+00	2.115	2	29	644
GO:0031012	extracellular matrix	7.42e-02	1.00e+00	3.705	1	4	107
GO:0005615	extracellular space	7.45e-02	1.00e+00	2.100	2	15	651
GO:0000398	mRNA splicing, via spliceosome	8.83e-02	1.00e+00	3.446	1	15	128
GO:0008270	zinc ion binding	9.05e-02	1.00e+00	1.940	2	39	727
GO:0015629	actin cytoskeleton	9.35e-02	1.00e+00	3.359	1	5	136
GO:0030168	platelet activation	9.68e-02	1.00e+00	3.306	1	5	141
GO:0044212	transcription regulatory region DNA binding	9.81e-02	1.00e+00	3.286	1	13	143
GO:0001525	angiogenesis	1.00e-01	1.00e+00	3.256	1	2	146
GO:0016324	apical plasma membrane	1.01e-01	1.00e+00	3.246	1	2	147
GO:0044822	poly(A) RNA binding	1.07e-01	1.00e+00	1.804	2	45	799
GO:0006367	transcription initiation from RNA polymerase II promoter	1.10e-01	1.00e+00	3.115	1	18	161
GO:0008380	RNA splicing	1.12e-01	1.00e+00	3.080	1	21	165
GO:0000166	nucleotide binding	1.20e-01	1.00e+00	2.987	1	13	176
GO:0005524	ATP binding	1.29e-01	1.00e+00	1.645	2	37	892
GO:0003677	DNA binding	1.42e-01	1.00e+00	1.559	2	52	947
GO:0030198	extracellular matrix organization	1.48e-01	1.00e+00	2.658	1	7	221
GO:0007155	cell adhesion	1.62e-01	1.00e+00	2.515	1	8	244
GO:0003723	RNA binding	1.64e-01	1.00e+00	2.498	1	22	247
GO:0005634	nucleus	1.72e-01	1.00e+00	0.782	4	158	3246
GO:0006508	proteolysis	1.75e-01	1.00e+00	2.402	1	11	264
GO:0009986	cell surface	1.91e-01	1.00e+00	2.261	1	5	291
GO:0016020	membrane	2.11e-01	1.00e+00	1.209	2	56	1207
GO:0005730	nucleolus	2.14e-01	1.00e+00	1.197	2	74	1217
GO:0007596	blood coagulation	2.19e-01	1.00e+00	2.041	1	13	339
GO:0006366	transcription from RNA polymerase II promoter	2.20e-01	1.00e+00	2.032	1	23	341
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	2.85e-01	1.00e+00	1.613	1	29	456
GO:0010467	gene expression	3.26e-01	1.00e+00	1.383	1	49	535
GO:0070062	extracellular vesicular exosome	3.34e-01	1.00e+00	0.766	2	51	1641
GO:0003700	sequence-specific DNA binding transcription factor activity	3.50e-01	1.00e+00	1.261	1	22	582
GO:0005576	extracellular region	3.89e-01	1.00e+00	1.073	1	15	663
GO:0006355	regulation of transcription, DNA-templated	4.13e-01	1.00e+00	0.964	1	31	715
GO:0005654	nucleoplasm	4.82e-01	1.00e+00	0.671	1	68	876
GO:0046872	metal ion binding	5.05e-01	1.00e+00	0.579	1	24	934
GO:0006351	transcription, DNA-templated	5.58e-01	1.00e+00	0.375	1	47	1076
GO:0005829	cytosol	7.57e-01	1.00e+00	-0.357	1	88	1787

chia-Fav

reg-snw-2335

Statistics

Genes (7)

Interactions (6)

Related GO terms (109)