reg-snw-1452

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.207	2.65e-07	4.48e-02	3.41e-02

chia-screen-data-Fav-reg-snw-1452 subnetwork

Genes (7)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
APLP2	334	15	-2.732	2.389	4	-	Yes	Yes
TCF20	6942	1	-1.825	2.207	112	TF	-	-
OR1D2	4991	1	-2.363	2.207	5	-	Yes	-
MED14	9282	1	-2.420	2.207	9	-	Yes	-
[ CSNK1A1 ]	1452	1	-1.644	2.207	25	-	-	-
FUBP1	8880	5	-2.414	2.389	18	TF	Yes	Yes
SFPQ	6421	15	-2.051	2.389	142	TF	Yes	-

Interactions (6)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
CSNK1A1	1452	TCF20	6942	pd	<	reg.ITFP.txt: no annot
CSNK1A1	1452	SFPQ	6421	pd	<	reg.ITFP.txt: no annot
CSNK1A1	1452	FUBP1	8880	pd	<	reg.ITFP.txt: no annot
APLP2	334	SFPQ	6421	pd	<	reg.ITFP.txt: no annot
TCF20	6942	MED14	9282	pd	>	reg.ITFP.txt: no annot
OR1D2	4991	TCF20	6942	pd	<	reg.ITFP.txt: no annot

Related GO terms (94)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:1902177	positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway	2.15e-03	1.00e+00	8.861	1	1	3
GO:0046914	transition metal ion binding	2.15e-03	1.00e+00	8.861	1	1	3
GO:0007176	regulation of epidermal growth factor-activated receptor activity	2.86e-03	1.00e+00	8.446	1	1	4
GO:0042382	paraspeckles	3.58e-03	1.00e+00	8.124	1	3	5
GO:0042754	negative regulation of circadian rhythm	4.29e-03	1.00e+00	7.861	1	2	6
GO:0007617	mating behavior	5.01e-03	1.00e+00	7.639	1	1	7
GO:0000380	alternative mRNA splicing, via spliceosome	5.01e-03	1.00e+00	7.639	1	2	7
GO:0006878	cellular copper ion homeostasis	5.72e-03	1.00e+00	7.446	1	1	8
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	6.44e-03	1.00e+00	7.276	1	3	9
GO:0003713	transcription coactivator activity	6.97e-03	1.00e+00	3.922	2	21	184
GO:0001967	suckling behavior	7.15e-03	1.00e+00	7.124	1	4	10
GO:0030518	intracellular steroid hormone receptor signaling pathway	7.15e-03	1.00e+00	7.124	1	2	10
GO:0042809	vitamin D receptor binding	7.86e-03	1.00e+00	6.987	1	2	11
GO:0043393	regulation of protein binding	1.00e-02	1.00e+00	6.639	1	2	14
GO:0007186	G-protein coupled receptor signaling pathway	1.06e-02	1.00e+00	3.607	2	4	229
GO:0070932	histone H3 deacetylation	1.07e-02	1.00e+00	6.539	1	2	15
GO:0000060	protein import into nucleus, translocation	1.35e-02	1.00e+00	6.198	1	1	19
GO:0001205	RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription	1.35e-02	1.00e+00	6.198	1	1	19
GO:0046966	thyroid hormone receptor binding	1.43e-02	1.00e+00	6.124	1	3	20
GO:0044822	poly(A) RNA binding	1.49e-02	1.00e+00	2.389	3	45	799
GO:0001104	RNA polymerase II transcription cofactor activity	1.71e-02	1.00e+00	5.861	1	4	24
GO:0007338	single fertilization	1.71e-02	1.00e+00	5.861	1	1	24
GO:0030901	midbrain development	1.78e-02	1.00e+00	5.802	1	1	25
GO:0000976	transcription regulatory region sequence-specific DNA binding	1.78e-02	1.00e+00	5.802	1	3	25
GO:0016592	mediator complex	1.78e-02	1.00e+00	5.802	1	6	25
GO:0007608	sensory perception of smell	1.92e-02	1.00e+00	5.691	1	2	27
GO:0050885	neuromuscular process controlling balance	1.99e-02	1.00e+00	5.639	1	1	28
GO:0042752	regulation of circadian rhythm	2.06e-02	1.00e+00	5.588	1	5	29
GO:0030374	ligand-dependent nuclear receptor transcription coactivator activity	2.13e-02	1.00e+00	5.539	1	3	30
GO:0003712	transcription cofactor activity	2.41e-02	1.00e+00	5.359	1	3	34
GO:0004984	olfactory receptor activity	2.41e-02	1.00e+00	5.359	1	1	34
GO:0050911	detection of chemical stimulus involved in sensory perception of smell	2.41e-02	1.00e+00	5.359	1	1	34
GO:0030521	androgen receptor signaling pathway	2.48e-02	1.00e+00	5.317	1	3	35
GO:0030900	forebrain development	2.55e-02	1.00e+00	5.276	1	2	36
GO:0048511	rhythmic process	2.69e-02	1.00e+00	5.198	1	5	38
GO:0019827	stem cell maintenance	2.76e-02	1.00e+00	5.161	1	4	39
GO:0004867	serine-type endopeptidase inhibitor activity	2.97e-02	1.00e+00	5.054	1	1	42
GO:0001047	core promoter binding	2.97e-02	1.00e+00	5.054	1	4	42
GO:0008203	cholesterol metabolic process	3.32e-02	1.00e+00	4.891	1	2	47
GO:0007626	locomotory behavior	3.32e-02	1.00e+00	4.891	1	1	47
GO:0006310	DNA recombination	3.53e-02	1.00e+00	4.802	1	8	50
GO:0003697	single-stranded DNA binding	4.02e-02	1.00e+00	4.613	1	4	57
GO:0000777	condensed chromosome kinetochore	4.02e-02	1.00e+00	4.613	1	6	57
GO:0042826	histone deacetylase binding	4.09e-02	1.00e+00	4.588	1	5	58
GO:0006935	chemotaxis	4.09e-02	1.00e+00	4.588	1	2	58
GO:0000785	chromatin	4.15e-02	1.00e+00	4.563	1	6	59
GO:0005634	nucleus	4.47e-02	1.00e+00	1.104	5	158	3246
GO:0016020	membrane	4.49e-02	1.00e+00	1.794	3	56	1207
GO:0006928	cellular component movement	4.91e-02	1.00e+00	4.317	1	6	70
GO:0010951	negative regulation of endopeptidase activity	4.98e-02	1.00e+00	4.296	1	2	71
GO:0016363	nuclear matrix	5.12e-02	1.00e+00	4.256	1	10	73
GO:0016055	Wnt signaling pathway	6.07e-02	1.00e+00	4.003	1	6	87
GO:0007166	cell surface receptor signaling pathway	6.21e-02	1.00e+00	3.970	1	3	89
GO:0008201	heparin binding	6.35e-02	1.00e+00	3.938	1	4	91
GO:0045944	positive regulation of transcription from RNA polymerase II promoter	7.31e-02	1.00e+00	2.115	2	29	644
GO:0010628	positive regulation of gene expression	7.36e-02	1.00e+00	3.718	1	2	106
GO:0006397	mRNA processing	7.63e-02	1.00e+00	3.665	1	12	110
GO:0004872	receptor activity	8.03e-02	1.00e+00	3.588	1	4	116
GO:0016607	nuclear speck	8.43e-02	1.00e+00	3.515	1	8	122
GO:0004930	G-protein coupled receptor activity	8.56e-02	1.00e+00	3.492	1	2	124
GO:0004672	protein kinase activity	8.63e-02	1.00e+00	3.480	1	5	125
GO:0044212	transcription regulatory region DNA binding	9.81e-02	1.00e+00	3.286	1	13	143
GO:0006367	transcription initiation from RNA polymerase II promoter	1.10e-01	1.00e+00	3.115	1	18	161
GO:0007067	mitotic nuclear division	1.12e-01	1.00e+00	3.080	1	9	165
GO:0008380	RNA splicing	1.12e-01	1.00e+00	3.080	1	21	165
GO:0000166	nucleotide binding	1.20e-01	1.00e+00	2.987	1	13	176
GO:0005654	nucleoplasm	1.25e-01	1.00e+00	1.671	2	68	876
GO:0004674	protein serine/threonine kinase activity	1.33e-01	1.00e+00	2.824	1	8	197
GO:0006357	regulation of transcription from RNA polymerase II promoter	1.37e-01	1.00e+00	2.781	1	14	203
GO:0006281	DNA repair	1.37e-01	1.00e+00	2.781	1	24	203
GO:0003677	DNA binding	1.42e-01	1.00e+00	1.559	2	52	947
GO:0005813	centrosome	1.46e-01	1.00e+00	2.684	1	10	217
GO:0030198	extracellular matrix organization	1.48e-01	1.00e+00	2.658	1	7	221
GO:0006351	transcription, DNA-templated	1.75e-01	1.00e+00	1.375	2	47	1076
GO:0006468	protein phosphorylation	1.97e-01	1.00e+00	2.212	1	6	301
GO:0045892	negative regulation of transcription, DNA-templated	2.06e-01	1.00e+00	2.138	1	17	317
GO:0005730	nucleolus	2.14e-01	1.00e+00	1.197	2	74	1217
GO:0006366	transcription from RNA polymerase II promoter	2.20e-01	1.00e+00	2.032	1	23	341
GO:0042802	identical protein binding	2.28e-01	1.00e+00	1.978	1	15	354
GO:0045893	positive regulation of transcription, DNA-templated	2.41e-01	1.00e+00	1.888	1	21	377
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	2.85e-01	1.00e+00	1.613	1	29	456
GO:0010467	gene expression	3.26e-01	1.00e+00	1.383	1	49	535
GO:0005515	protein binding	3.34e-01	1.00e+00	0.436	4	198	4124
GO:0005887	integral component of plasma membrane	3.46e-01	1.00e+00	1.279	1	8	575
GO:0003700	sequence-specific DNA binding transcription factor activity	3.50e-01	1.00e+00	1.261	1	22	582
GO:0007165	signal transduction	3.67e-01	1.00e+00	1.175	1	24	618
GO:0005886	plasma membrane	3.75e-01	1.00e+00	0.645	2	46	1784
GO:0006355	regulation of transcription, DNA-templated	4.13e-01	1.00e+00	0.964	1	31	715
GO:0008270	zinc ion binding	4.18e-01	1.00e+00	0.940	1	39	727
GO:0005524	ATP binding	4.89e-01	1.00e+00	0.645	1	37	892
GO:0016021	integral component of membrane	6.96e-01	1.00e+00	-0.129	1	19	1526
GO:0070062	extracellular vesicular exosome	7.24e-01	1.00e+00	-0.234	1	51	1641
GO:0005829	cytosol	7.57e-01	1.00e+00	-0.357	1	88	1787
GO:0005737	cytoplasm	8.89e-01	1.00e+00	-0.916	1	127	2633

chia-Fav

reg-snw-1452

Statistics

Genes (7)

Interactions (6)

Related GO terms (94)