reg-snw-10196

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.454	1.21e-08	7.89e-03	7.06e-03

chia-screen-data-Fav-reg-snw-10196 subnetwork

Genes (5)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
ETF1	2107	35	-2.829	2.503	6	-	Yes	Yes
SYNCRIP	10492	42	-2.401	2.503	144	TF	Yes	Yes
CPSF3	51692	43	-2.686	2.503	31	-	Yes	Yes
[ PRMT3 ]	10196	5	-1.807	2.454	26	TF	-	-
TRAIP	10293	13	-2.546	2.454	30	TF	Yes	-

Interactions (4)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
PRMT3	10196	CPSF3	51692	pd	>	reg.ITFP.txt: no annot
ETF1	2107	SYNCRIP	10492	pd	<	reg.ITFP.txt: no annot
SYNCRIP	10492	CPSF3	51692	pd	>	reg.ITFP.txt: no annot
TRAIP	10293	CPSF3	51692	pd	>	reg.ITFP.txt: no annot

Related GO terms (70)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0003723	RNA binding	1.54e-04	1.00e+00	4.568	3	22	247
GO:0016149	translation release factor activity, codon specific	5.12e-04	1.00e+00	10.931	1	1	1
GO:0008079	translation termination factor activity	5.12e-04	1.00e+00	10.931	1	1	1
GO:0030529	ribonucleoprotein complex	6.85e-04	1.00e+00	5.574	2	5	82
GO:0034969	histone arginine methylation	1.02e-03	1.00e+00	9.931	1	1	2
GO:0003747	translation release factor activity	1.02e-03	1.00e+00	9.931	1	2	2
GO:0016274	protein-arginine N-methyltransferase activity	1.54e-03	1.00e+00	9.347	1	1	3
GO:0008469	histone-arginine N-methyltransferase activity	1.54e-03	1.00e+00	9.347	1	1	3
GO:0000398	mRNA splicing, via spliceosome	1.66e-03	1.00e+00	4.931	2	15	128
GO:0006449	regulation of translational termination	2.05e-03	1.00e+00	8.931	1	1	4
GO:0072341	modified amino acid binding	2.05e-03	1.00e+00	8.931	1	1	4
GO:0035242	protein-arginine omega-N asymmetric methyltransferase activity	2.05e-03	1.00e+00	8.931	1	1	4
GO:0097452	GAIT complex	2.05e-03	1.00e+00	8.931	1	2	4
GO:0019919	peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	2.05e-03	1.00e+00	8.931	1	1	4
GO:0004521	endoribonuclease activity	2.56e-03	1.00e+00	8.610	1	1	5
GO:0006398	histone mRNA 3'-end processing	2.56e-03	1.00e+00	8.610	1	1	5
GO:0071204	histone pre-mRNA 3'end processing complex	2.56e-03	1.00e+00	8.610	1	1	5
GO:0070934	CRD-mediated mRNA stabilization	2.56e-03	1.00e+00	8.610	1	2	5
GO:0008380	RNA splicing	2.74e-03	1.00e+00	4.565	2	21	165
GO:0070937	CRD-mediated mRNA stability complex	3.07e-03	1.00e+00	8.347	1	2	6
GO:0008409	5'-3' exonuclease activity	3.58e-03	1.00e+00	8.124	1	2	7
GO:0006379	mRNA cleavage	4.60e-03	1.00e+00	7.762	1	2	9
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	4.60e-03	1.00e+00	7.762	1	3	9
GO:0008143	poly(A) binding	5.11e-03	1.00e+00	7.610	1	2	10
GO:0006479	protein methylation	5.62e-03	1.00e+00	7.472	1	2	11
GO:0043022	ribosome binding	8.68e-03	1.00e+00	6.844	1	2	17
GO:0006378	mRNA polyadenylation	9.18e-03	1.00e+00	6.762	1	3	18
GO:0031397	negative regulation of protein ubiquitination	9.18e-03	1.00e+00	6.762	1	2	18
GO:0071346	cellular response to interferon-gamma	1.02e-02	1.00e+00	6.610	1	2	20
GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	1.07e-02	1.00e+00	6.539	1	2	21
GO:0005057	receptor signaling protein activity	1.32e-02	1.00e+00	6.231	1	2	26
GO:0005515	protein binding	1.34e-02	1.00e+00	1.244	5	198	4124
GO:0008168	methyltransferase activity	1.53e-02	1.00e+00	6.025	1	2	30
GO:0017148	negative regulation of translation	1.68e-02	1.00e+00	5.887	1	5	33
GO:0031124	mRNA 3'-end processing	1.78e-02	1.00e+00	5.802	1	4	35
GO:0006369	termination of RNA polymerase II transcription	1.93e-02	1.00e+00	5.684	1	5	38
GO:0006396	RNA processing	2.03e-02	1.00e+00	5.610	1	4	40
GO:0005840	ribosome	2.03e-02	1.00e+00	5.610	1	2	40
GO:0006406	mRNA export from nucleus	2.23e-02	1.00e+00	5.472	1	7	44
GO:0010467	gene expression	2.68e-02	1.00e+00	2.868	2	49	535
GO:0071013	catalytic step 2 spliceosome	3.09e-02	1.00e+00	5.001	1	5	61
GO:0006415	translational termination	3.19e-02	1.00e+00	4.954	1	2	63
GO:0001649	osteoblast differentiation	3.73e-02	1.00e+00	4.722	1	5	74
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	4.23e-02	1.00e+00	4.539	1	5	84
GO:0044822	poly(A) RNA binding	5.66e-02	1.00e+00	2.289	2	45	799
GO:0005654	nucleoplasm	6.69e-02	1.00e+00	2.157	2	68	876
GO:0016874	ligase activity	7.26e-02	1.00e+00	3.742	1	11	146
GO:0046872	metal ion binding	7.52e-02	1.00e+00	2.064	2	24	934
GO:0016071	mRNA metabolic process	8.41e-02	1.00e+00	3.522	1	10	170
GO:0000166	nucleotide binding	8.69e-02	1.00e+00	3.472	1	13	176
GO:0006412	translation	8.79e-02	1.00e+00	3.456	1	12	178
GO:0004842	ubiquitin-protein transferase activity	8.84e-02	1.00e+00	3.448	1	17	179
GO:0016070	RNA metabolic process	9.26e-02	1.00e+00	3.377	1	10	188
GO:0016567	protein ubiquitination	9.26e-02	1.00e+00	3.377	1	14	188
GO:0035556	intracellular signal transduction	9.78e-02	1.00e+00	3.295	1	5	199
GO:0008283	cell proliferation	1.17e-01	1.00e+00	3.031	1	8	239
GO:0006366	transcription from RNA polymerase II promoter	1.63e-01	1.00e+00	2.518	1	23	341
GO:0048471	perinuclear region of cytoplasm	1.64e-01	1.00e+00	2.505	1	11	344
GO:0044267	cellular protein metabolic process	1.68e-01	1.00e+00	2.472	1	14	352
GO:0005783	endoplasmic reticulum	1.80e-01	1.00e+00	2.358	1	12	381
GO:0006915	apoptotic process	1.93e-01	1.00e+00	2.248	1	15	411
GO:0016032	viral process	2.01e-01	1.00e+00	2.190	1	30	428
GO:0005829	cytosol	2.28e-01	1.00e+00	1.128	2	88	1787
GO:0007165	signal transduction	2.79e-01	1.00e+00	1.660	1	24	618
GO:0006355	regulation of transcription, DNA-templated	3.16e-01	1.00e+00	1.450	1	31	715
GO:0008270	zinc ion binding	3.21e-01	1.00e+00	1.426	1	39	727
GO:0005737	cytoplasm	4.09e-01	1.00e+00	0.569	2	127	2633
GO:0016020	membrane	4.83e-01	1.00e+00	0.694	1	56	1207
GO:0005730	nucleolus	4.86e-01	1.00e+00	0.682	1	74	1217
GO:0005634	nucleus	8.67e-01	1.00e+00	-0.733	1	158	3246

chia-Fav

reg-snw-10196

Statistics

Genes (5)

Interactions (4)

Related GO terms (70)