reg-snw-26233

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.689	4.40e-10	9.47e-04	1.10e-03

chia-screen-data-Fav-reg-snw-26233 subnetwork

Genes (5)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
VARS	7407	60	-2.366	2.689	124	TF	Yes	-
[ FBXL6 ]	26233	28	-2.253	2.689	22	-	Yes	-
GPS1	2873	86	-3.621	2.689	36	TF	Yes	Yes
PHB	5245	82	-2.743	2.689	36	-	Yes	Yes
FTSJ1	24140	43	-2.463	2.689	35	-	Yes	Yes

Interactions (4)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
PHB	5245	VARS	7407	pd	<	reg.ITFP.txt: no annot
VARS	7407	FTSJ1	24140	pd	>	reg.ITFP.txt: no annot
VARS	7407	FBXL6	26233	pd	>	reg.ITFP.txt: no annot
GPS1	2873	PHB	5245	pd	>	reg.ITFP.txt: no annot

Related GO terms (48)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0004832	valine-tRNA ligase activity	5.12e-04	1.00e+00	10.931	1	1	1
GO:0002128	tRNA nucleoside ribose methylation	5.12e-04	1.00e+00	10.931	1	1	1
GO:0006438	valyl-tRNA aminoacylation	5.12e-04	1.00e+00	10.931	1	1	1
GO:0008175	tRNA methyltransferase activity	5.12e-04	1.00e+00	10.931	1	1	1
GO:2000323	negative regulation of glucocorticoid receptor signaling pathway	2.56e-03	1.00e+00	8.610	1	1	5
GO:0002161	aminoacyl-tRNA editing activity	2.56e-03	1.00e+00	8.610	1	1	5
GO:0050847	progesterone receptor signaling pathway	3.07e-03	1.00e+00	8.347	1	2	6
GO:0002181	cytoplasmic translation	3.07e-03	1.00e+00	8.347	1	1	6
GO:0010944	negative regulation of transcription by competitive promoter binding	4.09e-03	1.00e+00	7.931	1	1	8
GO:0006450	regulation of translational fidelity	4.09e-03	1.00e+00	7.931	1	1	8
GO:0010388	cullin deneddylation	4.09e-03	1.00e+00	7.931	1	4	8
GO:0071354	cellular response to interleukin-6	4.60e-03	1.00e+00	7.762	1	1	9
GO:0005095	GTPase inhibitor activity	5.11e-03	1.00e+00	7.610	1	1	10
GO:0060766	negative regulation of androgen receptor signaling pathway	5.62e-03	1.00e+00	7.472	1	4	11
GO:0016575	histone deacetylation	7.15e-03	1.00e+00	7.124	1	2	14
GO:0000188	inactivation of MAPK activity	7.66e-03	1.00e+00	7.025	1	1	15
GO:0071897	DNA biosynthetic process	1.02e-02	1.00e+00	6.610	1	2	20
GO:0008180	COP9 signalosome	1.22e-02	1.00e+00	6.347	1	6	24
GO:0006418	tRNA aminoacylation for protein translation	1.48e-02	1.00e+00	6.073	1	4	29
GO:0007254	JNK cascade	1.73e-02	1.00e+00	5.844	1	1	34
GO:0042826	histone deacetylase binding	2.94e-02	1.00e+00	5.073	1	5	58
GO:0030308	negative regulation of cell growth	3.53e-02	1.00e+00	4.802	1	3	70
GO:0001649	osteoblast differentiation	3.73e-02	1.00e+00	4.722	1	5	74
GO:0005739	mitochondrion	3.97e-02	1.00e+00	2.567	2	32	659
GO:0042981	regulation of apoptotic process	5.61e-02	1.00e+00	4.124	1	4	112
GO:0007049	cell cycle	5.75e-02	1.00e+00	4.086	1	8	115
GO:0044212	transcription regulatory region DNA binding	7.11e-02	1.00e+00	3.772	1	13	143
GO:0004842	ubiquitin-protein transferase activity	8.84e-02	1.00e+00	3.448	1	17	179
GO:0016567	protein ubiquitination	9.26e-02	1.00e+00	3.377	1	14	188
GO:0005743	mitochondrial inner membrane	9.69e-02	1.00e+00	3.309	1	9	197
GO:0019899	enzyme binding	1.03e-01	1.00e+00	3.217	1	7	210
GO:0005737	cytoplasm	1.25e-01	1.00e+00	1.154	3	127	2633
GO:0006508	proteolysis	1.28e-01	1.00e+00	2.887	1	11	264
GO:0008285	negative regulation of cell proliferation	1.34e-01	1.00e+00	2.818	1	11	277
GO:0045892	negative regulation of transcription, DNA-templated	1.52e-01	1.00e+00	2.623	1	17	317
GO:0045893	positive regulation of transcription, DNA-templated	1.79e-01	1.00e+00	2.373	1	21	377
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	2.13e-01	1.00e+00	2.099	1	29	456
GO:0010467	gene expression	2.46e-01	1.00e+00	1.868	1	49	535
GO:0005887	integral component of plasma membrane	2.62e-01	1.00e+00	1.764	1	8	575
GO:0007165	signal transduction	2.79e-01	1.00e+00	1.660	1	24	618
GO:0006355	regulation of transcription, DNA-templated	3.16e-01	1.00e+00	1.450	1	31	715
GO:0005654	nucleoplasm	3.75e-01	1.00e+00	1.157	1	68	876
GO:0005524	ATP binding	3.81e-01	1.00e+00	1.131	1	37	892
GO:0016020	membrane	4.83e-01	1.00e+00	0.694	1	56	1207
GO:0005634	nucleus	5.37e-01	1.00e+00	0.267	2	158	3246
GO:0070062	extracellular vesicular exosome	6.02e-01	1.00e+00	0.251	1	51	1641
GO:0005829	cytosol	6.36e-01	1.00e+00	0.128	1	88	1787
GO:0005515	protein binding	7.01e-01	1.00e+00	-0.078	2	198	4124

chia-Fav

reg-snw-26233

Statistics

Genes (5)

Interactions (4)

Related GO terms (48)