| GO:0006283 | transcription-coupled nucleotide-excision repair | 8 | 46 | 
| GO:0016020 | membrane | 80 | 1746 | 
| GO:0006289 | nucleotide-excision repair | 12 | 69 | 
| GO:0005515 | protein binding | 172 | 6127 | 
| GO:0008380 | RNA splicing | 13 | 232 | 
| GO:0006367 | transcription initiation from RNA polymerase II promoter | 8 | 184 | 
| GO:0000398 | mRNA splicing, via spliceosome | 12 | 165 | 
| GO:0003682 | chromatin binding | 12 | 334 | 
| GO:0016032 | viral process | 55 | 540 | 
| GO:0006368 | transcription elongation from RNA polymerase II promoter | 6 | 67 | 
| GO:0003899 | DNA-directed RNA polymerase activity | 2 | 25 | 
| GO:0005634 | nucleus | 131 | 4828 | 
| GO:0050434 | positive regulation of viral transcription | 5 | 44 | 
| GO:0006370 | 7-methylguanosine mRNA capping | 4 | 30 | 
| GO:0003677 | DNA binding | 26 | 1351 | 
| GO:0010467 | gene expression | 58 | 669 | 
| GO:0046872 | metal ion binding | 24 | 1465 | 
| GO:0005730 | nucleolus | 70 | 1684 | 
| GO:0005654 | nucleoplasm | 83 | 1095 | 
| GO:0005665 | DNA-directed RNA polymerase II, core complex | 4 | 16 | 
| GO:0032549 | ribonucleoside binding | 2 | 4 | 
| GO:0006281 | DNA repair | 22 | 264 | 
| GO:0044822 | poly(A) RNA binding | 50 | 1078 | 
| GO:0006366 | transcription from RNA polymerase II promoter | 12 | 425 |