| GO:0016020 | membrane | 80 | 1746 |
| GO:0005515 | protein binding | 172 | 6127 |
| GO:0045892 | negative regulation of transcription, DNA-templated | 14 | 424 |
| GO:0070419 | nonhomologous end joining complex | 1 | 6 |
| GO:0003684 | damaged DNA binding | 11 | 51 |
| GO:0033151 | V(D)J recombination | 1 | 9 |
| GO:0005829 | cytosol | 125 | 2562 |
| GO:0032481 | positive regulation of type I interferon production | 6 | 61 |
| GO:0006351 | transcription, DNA-templated | 25 | 1585 |
| GO:0006303 | double-strand break repair via nonhomologous end joining | 3 | 18 |
| GO:0075713 | establishment of integrated proviral latency | 2 | 8 |
| GO:0003690 | double-stranded DNA binding | 4 | 91 |
| GO:0005730 | nucleolus | 70 | 1684 |
| GO:0050769 | positive regulation of neurogenesis | 1 | 19 |
| GO:0005654 | nucleoplasm | 83 | 1095 |
| GO:0045893 | positive regulation of transcription, DNA-templated | 17 | 487 |
| GO:0006281 | DNA repair | 22 | 264 |
| GO:0044822 | poly(A) RNA binding | 50 | 1078 |
| GO:0005667 | transcription factor complex | 6 | 178 |
| GO:0004003 | ATP-dependent DNA helicase activity | 3 | 27 |
| GO:0032508 | DNA duplex unwinding | 4 | 42 |
| GO:0045087 | innate immune response | 20 | 616 |
| GO:0071475 | cellular hyperosmotic salinity response | 1 | 2 |
| GO:0008022 | protein C-terminus binding | 4 | 161 |
| GO:0016032 | viral process | 55 | 540 |
| GO:0071481 | cellular response to X-ray | 1 | 5 |
| GO:0051575 | 5'-deoxyribose-5-phosphate lyase activity | 2 | 4 |
| GO:0000723 | telomere maintenance | 8 | 59 |
| GO:0044212 | transcription regulatory region DNA binding | 6 | 171 |
| GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | 19 | 811 |
| GO:0005524 | ATP binding | 46 | 1354 |
| GO:0006302 | double-strand break repair | 8 | 62 |
| GO:0005634 | nucleus | 131 | 4828 |
| GO:0003691 | double-stranded telomeric DNA binding | 1 | 5 |
| GO:0003677 | DNA binding | 26 | 1351 |
| GO:0006266 | DNA ligation | 1 | 5 |
| GO:0043564 | Ku70:Ku80 complex | 1 | 2 |
| GO:0000783 | nuclear telomere cap complex | 1 | 9 |
| GO:0007420 | brain development | 1 | 172 |