reg-snw-5799

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.281	1.09e-07	2.79e-02	2.18e-02

chia-screen-data-Fav-reg-snw-5799 subnetwork

Genes (13)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
FOXJ3	22887	15	-2.407	2.369	87	TF	Yes	Yes
FBXL6	26233	28	-2.253	2.689	22	-	Yes	-
BEST1	7439	3	-2.250	2.281	19	-	Yes	-
REXO1	57455	12	-2.303	2.369	130	TF	Yes	-
ZDHHC20	253832	9	-2.673	2.326	25	-	Yes	-
ARL4C	10123	2	-2.307	2.281	1	-	Yes	-
[ PTPRN2 ]	5799	1	-0.718	2.281	12	-	-	-
VARS	7407	60	-2.366	2.689	124	TF	Yes	-
ENPP7	339221	10	-2.569	2.369	6	-	Yes	Yes
DDX51	317781	2	-1.151	2.281	180	TF	-	-
KREMEN1	83999	2	-2.442	2.281	5	-	Yes	-
H1FX	8971	6	-2.421	2.369	40	TF	Yes	Yes
PRDM14	63978	7	-3.797	2.412	147	TF	Yes	Yes

Interactions (15)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
ZDHHC20	253832	DDX51	317781	pd	<	reg.ITFP.txt: no annot
PTPRN2	5799	PRDM14	63978	pd	<	reg.pazar.txt: no annot
ARL4C	10123	PRDM14	63978	pd	<	reg.pazar.txt: no annot
REXO1	57455	ENPP7	339221	pd	>	reg.ITFP.txt: no annot
FOXJ3	22887	REXO1	57455	pd	<>	reg.ITFP.txt: no annot
DDX51	317781	ENPP7	339221	pd	>	reg.ITFP.txt: no annot
VARS	7407	DDX51	317781	pd	<>	reg.ITFP.txt: no annot
VARS	7407	FBXL6	26233	pd	>	reg.ITFP.txt: no annot
PTPRN2	5799	REXO1	57455	pd	<	reg.ITFP.txt: no annot
FBXL6	26233	DDX51	317781	pd	<	reg.ITFP.txt: no annot
PTPRN2	5799	DDX51	317781	pd	<	reg.ITFP.txt: no annot
KREMEN1	83999	DDX51	317781	pd	<	reg.ITFP.txt: no annot
REXO1	57455	DDX51	317781	pd	<>	reg.ITFP.txt: no annot
H1FX	8971	REXO1	57455	pd	<>	reg.ITFP.txt: no annot
BEST1	7439	DDX51	317781	pd	<	reg.ITFP.txt: no annot

Related GO terms (90)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0034972	histone H3-R26 methylation	1.33e-03	1.00e+00	9.553	1	1	1
GO:0004832	valine-tRNA ligase activity	1.33e-03	1.00e+00	9.553	1	1	1
GO:0006438	valyl-tRNA aminoacylation	1.33e-03	1.00e+00	9.553	1	1	1
GO:0001827	inner cell mass cell fate commitment	1.33e-03	1.00e+00	9.553	1	1	1
GO:0006684	sphingomyelin metabolic process	2.66e-03	1.00e+00	8.553	1	1	2
GO:0004767	sphingomyelin phosphodiesterase activity	3.99e-03	1.00e+00	7.968	1	1	3
GO:0030321	transepithelial chloride transport	5.32e-03	1.00e+00	7.553	1	1	4
GO:0060828	regulation of canonical Wnt signaling pathway	5.32e-03	1.00e+00	7.553	1	1	4
GO:0044030	regulation of DNA methylation	5.32e-03	1.00e+00	7.553	1	1	4
GO:0030718	germ-line stem cell maintenance	5.32e-03	1.00e+00	7.553	1	1	4
GO:0002161	aminoacyl-tRNA editing activity	6.64e-03	1.00e+00	7.231	1	1	5
GO:0040037	negative regulation of fibroblast growth factor receptor signaling pathway	7.96e-03	1.00e+00	6.968	1	1	6
GO:0034260	negative regulation of GTPase activity	9.28e-03	1.00e+00	6.746	1	1	7
GO:0006450	regulation of translational fidelity	1.06e-02	1.00e+00	6.553	1	1	8
GO:0032456	endocytic recycling	1.06e-02	1.00e+00	6.553	1	2	8
GO:0050908	detection of light stimulus involved in visual perception	1.19e-02	1.00e+00	6.383	1	1	9
GO:0040029	regulation of gene expression, epigenetic	1.32e-02	1.00e+00	6.231	1	1	10
GO:0007154	cell communication	1.46e-02	1.00e+00	6.094	1	1	11
GO:0016020	membrane	1.57e-02	1.00e+00	1.638	5	56	1207
GO:0016409	palmitoyltransferase activity	1.59e-02	1.00e+00	5.968	1	1	12
GO:0004527	exonuclease activity	1.59e-02	1.00e+00	5.968	1	4	12
GO:0008156	negative regulation of DNA replication	1.72e-02	1.00e+00	5.853	1	1	13
GO:0048873	homeostasis of number of cells within a tissue	1.85e-02	1.00e+00	5.746	1	2	14
GO:0018345	protein palmitoylation	1.98e-02	1.00e+00	5.646	1	1	15
GO:0001708	cell fate specification	1.98e-02	1.00e+00	5.646	1	1	15
GO:0043014	alpha-tubulin binding	1.98e-02	1.00e+00	5.646	1	1	15
GO:0051924	regulation of calcium ion transport	1.98e-02	1.00e+00	5.646	1	1	15
GO:0005001	transmembrane receptor protein tyrosine phosphatase activity	1.98e-02	1.00e+00	5.646	1	1	15
GO:0019706	protein-cysteine S-palmitoyltransferase activity	2.24e-02	1.00e+00	5.466	1	1	17
GO:0009566	fertilization	2.37e-02	1.00e+00	5.383	1	1	18
GO:0005254	chloride channel activity	2.63e-02	1.00e+00	5.231	1	1	20
GO:0030658	transport vesicle membrane	2.89e-02	1.00e+00	5.094	1	1	22
GO:0006687	glycosphingolipid metabolic process	2.89e-02	1.00e+00	5.094	1	1	22
GO:0007281	germ cell development	2.89e-02	1.00e+00	5.094	1	1	22
GO:0006821	chloride transport	3.02e-02	1.00e+00	5.029	1	2	23
GO:0034707	chloride channel complex	3.15e-02	1.00e+00	4.968	1	1	24
GO:0005902	microvillus	3.28e-02	1.00e+00	4.909	1	1	25
GO:0008026	ATP-dependent helicase activity	3.79e-02	1.00e+00	4.695	1	3	29
GO:0006418	tRNA aminoacylation for protein translation	3.79e-02	1.00e+00	4.695	1	4	29
GO:0008168	methyltransferase activity	3.92e-02	1.00e+00	4.646	1	2	30
GO:0043195	terminal bouton	4.05e-02	1.00e+00	4.599	1	2	31
GO:0090305	nucleic acid phosphodiester bond hydrolysis	4.05e-02	1.00e+00	4.599	1	6	31
GO:0000786	nucleosome	4.44e-02	1.00e+00	4.466	1	2	34
GO:0000902	cell morphogenesis	4.56e-02	1.00e+00	4.424	1	5	35
GO:1902476	chloride transmembrane transport	4.69e-02	1.00e+00	4.383	1	2	36
GO:0030175	filopodium	4.82e-02	1.00e+00	4.344	1	1	37
GO:0006665	sphingolipid metabolic process	4.95e-02	1.00e+00	4.305	1	1	38
GO:0030141	secretory granule	5.71e-02	1.00e+00	4.094	1	2	44
GO:0006334	nucleosome assembly	6.58e-02	1.00e+00	3.881	1	4	51
GO:0035335	peptidyl-tyrosine dephosphorylation	7.70e-02	1.00e+00	3.646	1	2	60
GO:0006470	protein dephosphorylation	7.83e-02	1.00e+00	3.622	1	2	61
GO:0003676	nucleic acid binding	8.44e-02	1.00e+00	3.509	1	4	66
GO:0006364	rRNA processing	8.57e-02	1.00e+00	3.487	1	2	67
GO:0043235	receptor complex	9.66e-02	1.00e+00	3.305	1	1	76
GO:0016055	Wnt signaling pathway	1.10e-01	1.00e+00	3.110	1	6	87
GO:0034220	ion transmembrane transport	1.21e-01	1.00e+00	2.968	1	2	96
GO:0007601	visual perception	1.22e-01	1.00e+00	2.953	1	2	97
GO:0005788	endoplasmic reticulum lumen	1.30e-01	1.00e+00	2.853	1	4	104
GO:0016323	basolateral plasma membrane	1.32e-01	1.00e+00	2.825	1	3	106
GO:0016021	integral component of membrane	1.32e-01	1.00e+00	0.977	4	19	1526
GO:0003924	GTPase activity	1.47e-01	1.00e+00	2.658	1	7	119
GO:0006184	GTP catabolic process	1.60e-01	1.00e+00	2.531	1	7	130
GO:0005886	plasma membrane	2.01e-01	1.00e+00	0.752	4	46	1784
GO:0007264	small GTPase mediated signal transduction	2.09e-01	1.00e+00	2.110	1	8	174
GO:0004842	ubiquitin-protein transferase activity	2.14e-01	1.00e+00	2.069	1	17	179
GO:0005730	nucleolus	2.15e-01	1.00e+00	0.889	3	74	1217
GO:0016567	protein ubiquitination	2.23e-01	1.00e+00	1.998	1	14	188
GO:0005525	GTP binding	2.33e-01	1.00e+00	1.931	1	12	197
GO:0006355	regulation of transcription, DNA-templated	2.46e-01	1.00e+00	1.071	2	31	715
GO:0006200	ATP catabolic process	2.56e-01	1.00e+00	1.778	1	13	219
GO:0044822	poly(A) RNA binding	2.88e-01	1.00e+00	0.911	2	45	799
GO:0006508	proteolysis	3.00e-01	1.00e+00	1.509	1	11	264
GO:0043565	sequence-specific DNA binding	3.10e-01	1.00e+00	1.450	1	8	275
GO:0008285	negative regulation of cell proliferation	3.12e-01	1.00e+00	1.439	1	11	277
GO:0005524	ATP binding	3.36e-01	1.00e+00	0.752	2	37	892
GO:0055085	transmembrane transport	3.60e-01	1.00e+00	1.191	1	13	329
GO:0003677	DNA binding	3.64e-01	1.00e+00	0.666	2	52	947
GO:0006351	transcription, DNA-templated	4.28e-01	1.00e+00	0.482	2	47	1076
GO:0005794	Golgi apparatus	4.32e-01	1.00e+00	0.856	1	6	415
GO:0005634	nucleus	4.45e-01	1.00e+00	0.210	5	158	3246
GO:0010467	gene expression	5.20e-01	1.00e+00	0.490	1	49	535
GO:0005887	integral component of plasma membrane	5.46e-01	1.00e+00	0.386	1	8	575
GO:0003700	sequence-specific DNA binding transcription factor activity	5.50e-01	1.00e+00	0.368	1	22	582
GO:0005739	mitochondrion	5.97e-01	1.00e+00	0.189	1	32	659
GO:0008270	zinc ion binding	6.34e-01	1.00e+00	0.047	1	39	727
GO:0044281	small molecule metabolic process	6.91e-01	1.00e+00	-0.168	1	35	844
GO:0005829	cytosol	7.18e-01	1.00e+00	-0.250	2	88	1787
GO:0046872	metal ion binding	7.30e-01	1.00e+00	-0.314	1	24	934
GO:0005515	protein binding	9.58e-01	1.00e+00	-0.872	3	198	4124
GO:0005737	cytoplasm	9.83e-01	1.00e+00	-1.810	1	127	2633

chia-Fav

reg-snw-5799

Statistics

Genes (13)

Interactions (15)

Related GO terms (90)