reg-snw-128637

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.303	8.30e-08	2.41e-02	1.91e-02

chia-screen-data-Fav-reg-snw-128637 subnetwork

Genes (5)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
APLP2	334	15	-2.732	2.389	4	-	Yes	Yes
ERCC6	2074	1	-1.604	2.303	3	TF	-	-
PRDM14	63978	7	-3.797	2.412	147	TF	Yes	Yes
SFPQ	6421	15	-2.051	2.389	142	TF	Yes	-
[ TBC1D20 ]	128637	1	-1.333	2.303	14	-	-	-

Interactions (4)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
PRDM14	63978	TBC1D20	128637	pd	>	reg.pazar.txt: no annot
ERCC6	2074	TBC1D20	128637	pd	>	reg.ITFP.txt: no annot
APLP2	334	SFPQ	6421	pd	<	reg.ITFP.txt: no annot
SFPQ	6421	TBC1D20	128637	pd	>	reg.ITFP.txt: no annot

Related GO terms (111)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0034972	histone H3-R26 methylation	5.12e-04	1.00e+00	10.931	1	1	1
GO:0001827	inner cell mass cell fate commitment	5.12e-04	1.00e+00	10.931	1	1	1
GO:0090110	cargo loading into COPII-coated vesicle	1.02e-03	1.00e+00	9.931	1	1	2
GO:1902953	positive regulation of ER to Golgi vesicle-mediated transport	1.02e-03	1.00e+00	9.931	1	1	2
GO:1902177	positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway	1.54e-03	1.00e+00	9.347	1	1	3
GO:0046914	transition metal ion binding	1.54e-03	1.00e+00	9.347	1	1	3
GO:0070309	lens fiber cell morphogenesis	1.54e-03	1.00e+00	9.347	1	1	3
GO:0000303	response to superoxide	2.05e-03	1.00e+00	8.931	1	1	4
GO:0044030	regulation of DNA methylation	2.05e-03	1.00e+00	8.931	1	1	4
GO:0007256	activation of JNKK activity	2.05e-03	1.00e+00	8.931	1	1	4
GO:0030718	germ-line stem cell maintenance	2.05e-03	1.00e+00	8.931	1	1	4
GO:0007176	regulation of epidermal growth factor-activated receptor activity	2.05e-03	1.00e+00	8.931	1	1	4
GO:0006290	pyrimidine dimer repair	2.05e-03	1.00e+00	8.931	1	2	4
GO:0042382	paraspeckles	2.56e-03	1.00e+00	8.610	1	3	5
GO:0032786	positive regulation of DNA-templated transcription, elongation	3.07e-03	1.00e+00	8.347	1	1	6
GO:0072520	seminiferous tubule development	3.07e-03	1.00e+00	8.347	1	1	6
GO:0042754	negative regulation of circadian rhythm	3.07e-03	1.00e+00	8.347	1	2	6
GO:0040037	negative regulation of fibroblast growth factor receptor signaling pathway	3.07e-03	1.00e+00	8.347	1	1	6
GO:0001675	acrosome assembly	3.58e-03	1.00e+00	8.124	1	1	7
GO:0032784	regulation of DNA-templated transcription, elongation	3.58e-03	1.00e+00	8.124	1	2	7
GO:0033126	positive regulation of GTP catabolic process	3.58e-03	1.00e+00	8.124	1	1	7
GO:0019068	virion assembly	3.58e-03	1.00e+00	8.124	1	1	7
GO:0007617	mating behavior	3.58e-03	1.00e+00	8.124	1	1	7
GO:0000380	alternative mRNA splicing, via spliceosome	3.58e-03	1.00e+00	8.124	1	2	7
GO:0006878	cellular copper ion homeostasis	4.09e-03	1.00e+00	7.931	1	1	8
GO:0030296	protein tyrosine kinase activator activity	4.09e-03	1.00e+00	7.931	1	1	8
GO:0010224	response to UV-B	4.09e-03	1.00e+00	7.931	1	1	8
GO:0006281	DNA repair	4.13e-03	1.00e+00	4.266	2	24	203
GO:0034389	lipid particle organization	4.60e-03	1.00e+00	7.762	1	1	9
GO:0001967	suckling behavior	5.11e-03	1.00e+00	7.610	1	4	10
GO:0040029	regulation of gene expression, epigenetic	5.11e-03	1.00e+00	7.610	1	1	10
GO:1902017	regulation of cilium assembly	5.62e-03	1.00e+00	7.472	1	1	11
GO:0008023	transcription elongation factor complex	5.62e-03	1.00e+00	7.472	1	2	11
GO:0048873	homeostasis of number of cells within a tissue	7.15e-03	1.00e+00	7.124	1	2	14
GO:0043393	regulation of protein binding	7.15e-03	1.00e+00	7.124	1	2	14
GO:0001708	cell fate specification	7.66e-03	1.00e+00	7.025	1	1	15
GO:0070932	histone H3 deacetylation	7.66e-03	1.00e+00	7.025	1	2	15
GO:0003677	DNA binding	7.83e-03	1.00e+00	2.629	3	52	947
GO:0045494	photoreceptor cell maintenance	8.68e-03	1.00e+00	6.844	1	1	17
GO:0010165	response to X-ray	8.68e-03	1.00e+00	6.844	1	2	17
GO:0009566	fertilization	9.18e-03	1.00e+00	6.762	1	1	18
GO:0061098	positive regulation of protein tyrosine kinase activity	9.18e-03	1.00e+00	6.762	1	1	18
GO:0003678	DNA helicase activity	9.18e-03	1.00e+00	6.762	1	1	18
GO:0006362	transcription elongation from RNA polymerase I promoter	1.02e-02	1.00e+00	6.610	1	3	20
GO:0005097	Rab GTPase activator activity	1.12e-02	1.00e+00	6.472	1	1	22
GO:0007281	germ cell development	1.12e-02	1.00e+00	6.472	1	1	22
GO:0030173	integral component of Golgi membrane	1.17e-02	1.00e+00	6.408	1	1	23
GO:0030901	midbrain development	1.27e-02	1.00e+00	6.288	1	1	25
GO:0007030	Golgi organization	1.27e-02	1.00e+00	6.288	1	1	25
GO:0007257	activation of JUN kinase activity	1.27e-02	1.00e+00	6.288	1	1	25
GO:0000976	transcription regulatory region sequence-specific DNA binding	1.27e-02	1.00e+00	6.288	1	3	25
GO:0010332	response to gamma radiation	1.32e-02	1.00e+00	6.231	1	2	26
GO:0005515	protein binding	1.34e-02	1.00e+00	1.244	5	198	4124
GO:0050885	neuromuscular process controlling balance	1.43e-02	1.00e+00	6.124	1	1	28
GO:0042752	regulation of circadian rhythm	1.48e-02	1.00e+00	6.073	1	5	29
GO:0008094	DNA-dependent ATPase activity	1.48e-02	1.00e+00	6.073	1	6	29
GO:0008168	methyltransferase activity	1.53e-02	1.00e+00	6.025	1	2	30
GO:0006284	base-excision repair	1.63e-02	1.00e+00	5.931	1	3	32
GO:0006888	ER to Golgi vesicle-mediated transport	1.73e-02	1.00e+00	5.844	1	1	34
GO:0000902	cell morphogenesis	1.78e-02	1.00e+00	5.802	1	5	35
GO:0032851	positive regulation of Rab GTPase activity	1.83e-02	1.00e+00	5.762	1	2	36
GO:0030900	forebrain development	1.83e-02	1.00e+00	5.762	1	2	36
GO:0009411	response to UV	1.83e-02	1.00e+00	5.762	1	3	36
GO:0048511	rhythmic process	1.93e-02	1.00e+00	5.684	1	5	38
GO:0006283	transcription-coupled nucleotide-excision repair	2.03e-02	1.00e+00	5.610	1	6	40
GO:0004867	serine-type endopeptidase inhibitor activity	2.13e-02	1.00e+00	5.539	1	1	42
GO:0001047	core promoter binding	2.13e-02	1.00e+00	5.539	1	4	42
GO:0008630	intrinsic apoptotic signaling pathway in response to DNA damage	2.13e-02	1.00e+00	5.539	1	2	42
GO:0017137	Rab GTPase binding	2.18e-02	1.00e+00	5.505	1	1	43
GO:0008203	cholesterol metabolic process	2.38e-02	1.00e+00	5.377	1	2	47
GO:0007626	locomotory behavior	2.38e-02	1.00e+00	5.377	1	1	47
GO:0006310	DNA recombination	2.53e-02	1.00e+00	5.288	1	8	50
GO:0009636	response to toxic substance	2.53e-02	1.00e+00	5.288	1	1	50
GO:0006289	nucleotide-excision repair	2.69e-02	1.00e+00	5.204	1	6	53
GO:0035264	multicellular organism growth	2.74e-02	1.00e+00	5.177	1	2	54
GO:0042826	histone deacetylase binding	2.94e-02	1.00e+00	5.073	1	5	58
GO:0000785	chromatin	2.99e-02	1.00e+00	5.049	1	6	59
GO:0006979	response to oxidative stress	3.23e-02	1.00e+00	4.931	1	3	64
GO:0047485	protein N-terminus binding	3.28e-02	1.00e+00	4.909	1	6	65
GO:0010951	negative regulation of endopeptidase activity	3.58e-02	1.00e+00	4.782	1	2	71
GO:0016363	nuclear matrix	3.68e-02	1.00e+00	4.742	1	10	73
GO:0005634	nucleus	4.48e-02	1.00e+00	1.267	4	158	3246
GO:0008201	heparin binding	4.57e-02	1.00e+00	4.424	1	4	91
GO:0006397	mRNA processing	5.51e-02	1.00e+00	4.150	1	12	110
GO:0008022	protein C-terminus binding	5.75e-02	1.00e+00	4.086	1	5	115
GO:0031965	nuclear membrane	6.48e-02	1.00e+00	3.909	1	8	130
GO:0032403	protein complex binding	6.48e-02	1.00e+00	3.909	1	5	130
GO:0005654	nucleoplasm	6.69e-02	1.00e+00	2.157	2	68	876
GO:0044212	transcription regulatory region DNA binding	7.11e-02	1.00e+00	3.772	1	13	143
GO:0008380	RNA splicing	8.17e-02	1.00e+00	3.565	1	21	165
GO:0000166	nucleotide binding	8.69e-02	1.00e+00	3.472	1	13	176
GO:0006351	transcription, DNA-templated	9.68e-02	1.00e+00	1.860	2	47	1076
GO:0006200	ATP catabolic process	1.07e-01	1.00e+00	3.157	1	13	219
GO:0030198	extracellular matrix organization	1.08e-01	1.00e+00	3.144	1	7	221
GO:0007186	G-protein coupled receptor signaling pathway	1.12e-01	1.00e+00	3.092	1	4	229
GO:0003682	chromatin binding	1.23e-01	1.00e+00	2.954	1	15	252
GO:0045892	negative regulation of transcription, DNA-templated	1.52e-01	1.00e+00	2.623	1	17	317
GO:0006366	transcription from RNA polymerase II promoter	1.63e-01	1.00e+00	2.518	1	23	341
GO:0042802	identical protein binding	1.69e-01	1.00e+00	2.464	1	15	354
GO:0005789	endoplasmic reticulum membrane	1.83e-01	1.00e+00	2.335	1	7	387
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	2.13e-01	1.00e+00	2.099	1	29	456
GO:0006355	regulation of transcription, DNA-templated	3.16e-01	1.00e+00	1.450	1	31	715
GO:0044822	poly(A) RNA binding	3.47e-01	1.00e+00	1.289	1	45	799
GO:0005524	ATP binding	3.81e-01	1.00e+00	1.131	1	37	892
GO:0046872	metal ion binding	3.95e-01	1.00e+00	1.064	1	24	934
GO:0016020	membrane	4.83e-01	1.00e+00	0.694	1	56	1207
GO:0005730	nucleolus	4.86e-01	1.00e+00	0.682	1	74	1217
GO:0016021	integral component of membrane	5.73e-01	1.00e+00	0.356	1	19	1526
GO:0070062	extracellular vesicular exosome	6.02e-01	1.00e+00	0.251	1	51	1641
GO:0005886	plasma membrane	6.35e-01	1.00e+00	0.131	1	46	1784
GO:0005737	cytoplasm	7.92e-01	1.00e+00	-0.431	1	127	2633

chia-Fav

reg-snw-128637

Statistics

Genes (5)

Interactions (4)

Related GO terms (111)