Dataset | Score | p-value 1 | p-value 2 | p-value 3 |
---|---|---|---|---|
chia-screen-data-Fav | 2.908 | 2.69e-16 | 1.97e-04 | 1.79e-03 |
Gene Symbol | Entrez Gene ID | Frequency | chia-screen-data-Fav gene score | Best subnetwork score | Degree | Chia-Hits Primary | Chia-Hits Secondary |
---|---|---|---|---|---|---|---|
PSMD2 | 5708 | 47 | -4.172 | 3.157 | 386 | Yes | Yes |
[ UNC119 ] | 9094 | 1 | -1.995 | 2.908 | 97 | - | - |
EIF2S2 | 8894 | 9 | -2.999 | 2.968 | 81 | Yes | Yes |
ZFP64 | 55734 | 3 | -3.174 | 2.908 | 14 | Yes | Yes |
CDC42 | 998 | 9 | -2.199 | 3.119 | 265 | Yes | Yes |
Gene Symbol 1 | Entrez Gene ID 1 | Gene Symbol 2 | Entrez Gene ID 2 | Type | Direction | Origin databases / Sources |
---|---|---|---|---|---|---|
UNC119 | 9094 | ZFP64 | 55734 | pp | -- | int.Intact: MI:0915(physical association); int.I2D: HPRD, IntAct, BioGrid, StelzlHigh; int.HPRD: yeast 2-hybrid |
CDC42 | 998 | UNC119 | 9094 | pp | -- | int.Intact: MI:0915(physical association); int.I2D: BioGrid, HPRD, StelzlHigh, IntAct; int.HPRD: yeast 2-hybrid |
PSMD2 | 5708 | UNC119 | 9094 | pp | -- | int.Intact: MI:0915(physical association); int.I2D: BioGrid, StelzlHigh, HPRD, IntAct; int.HPRD: yeast 2-hybrid |
EIF2S2 | 8894 | UNC119 | 9094 | pp | -- | int.Intact: MI:0915(physical association); int.I2D: BioGrid, HPRD, MINT, StelzlHigh, IntAct; int.Mint: MI:0915(physical association); int.HPRD: yeast 2-hybrid |
Accession number | Name | Hypergeometric test | Corrected p-value | Enrichment ratio | Occurrence in subnetwork | Occurrences in all snw genes | Occurrences in all int/reg genes |
---|---|---|---|---|---|---|---|
GO:0051233 | spindle midzone | 1.01e-05 | 1.45e-01 | 8.587 | 2 | 2 | 15 |
GO:0042176 | regulation of protein catabolic process | 1.15e-05 | 1.66e-01 | 8.494 | 2 | 2 | 16 |
GO:1900186 | negative regulation of clathrin-mediated endocytosis | 3.47e-04 | 1.00e+00 | 11.494 | 1 | 1 | 1 |
GO:2001287 | negative regulation of caveolin-mediated endocytosis | 3.47e-04 | 1.00e+00 | 11.494 | 1 | 1 | 1 |
GO:0071338 | positive regulation of hair follicle cell proliferation | 6.93e-04 | 1.00e+00 | 10.494 | 1 | 1 | 2 |
GO:0090135 | actin filament branching | 6.93e-04 | 1.00e+00 | 10.494 | 1 | 1 | 2 |
GO:0002176 | male germ cell proliferation | 6.93e-04 | 1.00e+00 | 10.494 | 1 | 1 | 2 |
GO:0060661 | submandibular salivary gland formation | 6.93e-04 | 1.00e+00 | 10.494 | 1 | 1 | 2 |
GO:0005850 | eukaryotic translation initiation factor 2 complex | 1.04e-03 | 1.00e+00 | 9.909 | 1 | 1 | 3 |
GO:0051683 | establishment of Golgi localization | 1.04e-03 | 1.00e+00 | 9.909 | 1 | 1 | 3 |
GO:0034191 | apolipoprotein A-I receptor binding | 1.04e-03 | 1.00e+00 | 9.909 | 1 | 1 | 3 |
GO:0003161 | cardiac conduction system development | 1.04e-03 | 1.00e+00 | 9.909 | 1 | 1 | 3 |
GO:0007109 | cytokinesis, completion of separation | 1.04e-03 | 1.00e+00 | 9.909 | 1 | 1 | 3 |
GO:0060684 | epithelial-mesenchymal cell signaling | 1.39e-03 | 1.00e+00 | 9.494 | 1 | 1 | 4 |
GO:0051835 | positive regulation of synapse structural plasticity | 1.39e-03 | 1.00e+00 | 9.494 | 1 | 1 | 4 |
GO:0048664 | neuron fate determination | 1.39e-03 | 1.00e+00 | 9.494 | 1 | 1 | 4 |
GO:0072384 | organelle transport along microtubule | 1.39e-03 | 1.00e+00 | 9.494 | 1 | 1 | 4 |
GO:0035088 | establishment or maintenance of apical/basal cell polarity | 1.73e-03 | 1.00e+00 | 9.172 | 1 | 1 | 5 |
GO:0036336 | dendritic cell migration | 1.73e-03 | 1.00e+00 | 9.172 | 1 | 1 | 5 |
GO:0031256 | leading edge membrane | 1.73e-03 | 1.00e+00 | 9.172 | 1 | 1 | 5 |
GO:0060789 | hair follicle placode formation | 2.08e-03 | 1.00e+00 | 8.909 | 1 | 2 | 6 |
GO:0007097 | nuclear migration | 2.08e-03 | 1.00e+00 | 8.909 | 1 | 1 | 6 |
GO:0003334 | keratinocyte development | 2.08e-03 | 1.00e+00 | 8.909 | 1 | 1 | 6 |
GO:0048554 | positive regulation of metalloenzyme activity | 2.08e-03 | 1.00e+00 | 8.909 | 1 | 1 | 6 |
GO:0043497 | regulation of protein heterodimerization activity | 2.08e-03 | 1.00e+00 | 8.909 | 1 | 1 | 6 |
GO:0051988 | regulation of attachment of spindle microtubules to kinetochore | 2.42e-03 | 1.00e+00 | 8.687 | 1 | 2 | 7 |
GO:0051489 | regulation of filopodium assembly | 2.42e-03 | 1.00e+00 | 8.687 | 1 | 1 | 7 |
GO:0090136 | epithelial cell-cell adhesion | 3.12e-03 | 1.00e+00 | 8.324 | 1 | 1 | 9 |
GO:0031274 | positive regulation of pseudopodium assembly | 3.46e-03 | 1.00e+00 | 8.172 | 1 | 2 | 10 |
GO:0060047 | heart contraction | 3.46e-03 | 1.00e+00 | 8.172 | 1 | 1 | 10 |
GO:0005829 | cytosol | 3.86e-03 | 1.00e+00 | 2.209 | 4 | 86 | 2496 |
GO:0005838 | proteasome regulatory particle | 4.15e-03 | 1.00e+00 | 7.909 | 1 | 1 | 12 |
GO:0042953 | lipoprotein transport | 4.15e-03 | 1.00e+00 | 7.909 | 1 | 2 | 12 |
GO:0030234 | enzyme regulator activity | 4.50e-03 | 1.00e+00 | 7.794 | 1 | 2 | 13 |
GO:0031333 | negative regulation of protein complex assembly | 4.84e-03 | 1.00e+00 | 7.687 | 1 | 1 | 14 |
GO:0031996 | thioesterase binding | 4.84e-03 | 1.00e+00 | 7.687 | 1 | 1 | 14 |
GO:0030225 | macrophage differentiation | 5.19e-03 | 1.00e+00 | 7.587 | 1 | 2 | 15 |
GO:0030742 | GTP-dependent protein binding | 5.88e-03 | 1.00e+00 | 7.407 | 1 | 1 | 17 |
GO:0090316 | positive regulation of intracellular protein transport | 5.88e-03 | 1.00e+00 | 7.407 | 1 | 2 | 17 |
GO:0022624 | proteasome accessory complex | 5.88e-03 | 1.00e+00 | 7.407 | 1 | 1 | 17 |
GO:0007602 | phototransduction | 5.88e-03 | 1.00e+00 | 7.407 | 1 | 1 | 17 |
GO:0007088 | regulation of mitosis | 6.23e-03 | 1.00e+00 | 7.324 | 1 | 1 | 18 |
GO:0046847 | filopodium assembly | 6.57e-03 | 1.00e+00 | 7.246 | 1 | 1 | 19 |
GO:0061098 | positive regulation of protein tyrosine kinase activity | 7.26e-03 | 1.00e+00 | 7.102 | 1 | 1 | 21 |
GO:0031435 | mitogen-activated protein kinase kinase kinase binding | 7.26e-03 | 1.00e+00 | 7.102 | 1 | 1 | 21 |
GO:0031424 | keratinization | 7.60e-03 | 1.00e+00 | 7.035 | 1 | 1 | 22 |
GO:0036464 | cytoplasmic ribonucleoprotein granule | 7.60e-03 | 1.00e+00 | 7.035 | 1 | 2 | 22 |
GO:1900026 | positive regulation of substrate adhesion-dependent cell spreading | 7.95e-03 | 1.00e+00 | 6.971 | 1 | 3 | 23 |
GO:0002040 | sprouting angiogenesis | 7.95e-03 | 1.00e+00 | 6.971 | 1 | 2 | 23 |
GO:0051017 | actin filament bundle assembly | 7.95e-03 | 1.00e+00 | 6.971 | 1 | 1 | 23 |
GO:0007163 | establishment or maintenance of cell polarity | 8.29e-03 | 1.00e+00 | 6.909 | 1 | 2 | 24 |
GO:0008135 | translation factor activity, nucleic acid binding | 8.29e-03 | 1.00e+00 | 6.909 | 1 | 3 | 24 |
GO:0043552 | positive regulation of phosphatidylinositol 3-kinase activity | 8.98e-03 | 1.00e+00 | 6.794 | 1 | 3 | 26 |
GO:0045859 | regulation of protein kinase activity | 8.98e-03 | 1.00e+00 | 6.794 | 1 | 1 | 26 |
GO:0051149 | positive regulation of muscle cell differentiation | 9.33e-03 | 1.00e+00 | 6.739 | 1 | 4 | 27 |
GO:0032467 | positive regulation of cytokinesis | 9.33e-03 | 1.00e+00 | 6.739 | 1 | 2 | 27 |
GO:0031069 | hair follicle morphogenesis | 9.33e-03 | 1.00e+00 | 6.739 | 1 | 1 | 27 |
GO:0072686 | mitotic spindle | 1.00e-02 | 1.00e+00 | 6.636 | 1 | 3 | 29 |
GO:0045171 | intercellular bridge | 1.04e-02 | 1.00e+00 | 6.587 | 1 | 1 | 30 |
GO:0031647 | regulation of protein stability | 1.04e-02 | 1.00e+00 | 6.587 | 1 | 4 | 30 |
GO:0042692 | muscle cell differentiation | 1.17e-02 | 1.00e+00 | 6.407 | 1 | 4 | 34 |
GO:0034332 | adherens junction organization | 1.24e-02 | 1.00e+00 | 6.324 | 1 | 2 | 36 |
GO:0042059 | negative regulation of epidermal growth factor receptor signaling pathway | 1.24e-02 | 1.00e+00 | 6.324 | 1 | 2 | 36 |
GO:0045740 | positive regulation of DNA replication | 1.24e-02 | 1.00e+00 | 6.324 | 1 | 1 | 36 |
GO:0021762 | substantia nigra development | 1.52e-02 | 1.00e+00 | 6.035 | 1 | 4 | 44 |
GO:0034613 | cellular protein localization | 1.52e-02 | 1.00e+00 | 6.035 | 1 | 2 | 44 |
GO:0043525 | positive regulation of neuron apoptotic process | 1.58e-02 | 1.00e+00 | 5.971 | 1 | 4 | 46 |
GO:0007030 | Golgi organization | 1.69e-02 | 1.00e+00 | 5.879 | 1 | 3 | 49 |
GO:0003743 | translation initiation factor activity | 1.69e-02 | 1.00e+00 | 5.879 | 1 | 7 | 49 |
GO:0030175 | filopodium | 1.72e-02 | 1.00e+00 | 5.850 | 1 | 1 | 50 |
GO:0006521 | regulation of cellular amino acid metabolic process | 1.72e-02 | 1.00e+00 | 5.850 | 1 | 1 | 50 |
GO:0046330 | positive regulation of JNK cascade | 1.89e-02 | 1.00e+00 | 5.713 | 1 | 2 | 55 |
GO:0010467 | gene expression | 1.96e-02 | 1.00e+00 | 3.108 | 2 | 45 | 669 |
GO:0000502 | proteasome complex | 1.99e-02 | 1.00e+00 | 5.636 | 1 | 3 | 58 |
GO:0033138 | positive regulation of peptidyl-serine phosphorylation | 2.03e-02 | 1.00e+00 | 5.612 | 1 | 2 | 59 |
GO:0030141 | secretory granule | 2.13e-02 | 1.00e+00 | 5.540 | 1 | 4 | 62 |
GO:0006977 | DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest | 2.20e-02 | 1.00e+00 | 5.494 | 1 | 1 | 64 |
GO:0051436 | negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle | 2.23e-02 | 1.00e+00 | 5.472 | 1 | 2 | 65 |
GO:0031295 | T cell costimulation | 2.23e-02 | 1.00e+00 | 5.472 | 1 | 1 | 65 |
GO:0035264 | multicellular organism growth | 2.30e-02 | 1.00e+00 | 5.428 | 1 | 2 | 67 |
GO:0051437 | positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle | 2.40e-02 | 1.00e+00 | 5.365 | 1 | 2 | 70 |
GO:0002479 | antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent | 2.47e-02 | 1.00e+00 | 5.324 | 1 | 1 | 72 |
GO:0038096 | Fc-gamma receptor signaling pathway involved in phagocytosis | 2.54e-02 | 1.00e+00 | 5.285 | 1 | 2 | 74 |
GO:0051439 | regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle | 2.54e-02 | 1.00e+00 | 5.285 | 1 | 2 | 74 |
GO:0008584 | male gonad development | 2.57e-02 | 1.00e+00 | 5.265 | 1 | 3 | 75 |
GO:0042590 | antigen processing and presentation of exogenous peptide antigen via MHC class I | 2.57e-02 | 1.00e+00 | 5.265 | 1 | 1 | 75 |
GO:0060070 | canonical Wnt signaling pathway | 2.57e-02 | 1.00e+00 | 5.265 | 1 | 4 | 75 |
GO:0010629 | negative regulation of gene expression | 2.64e-02 | 1.00e+00 | 5.227 | 1 | 4 | 77 |
GO:0031145 | anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process | 2.71e-02 | 1.00e+00 | 5.190 | 1 | 2 | 79 |
GO:0045177 | apical part of cell | 2.78e-02 | 1.00e+00 | 5.154 | 1 | 3 | 81 |
GO:0000922 | spindle pole | 2.98e-02 | 1.00e+00 | 5.051 | 1 | 4 | 87 |
GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I | 3.15e-02 | 1.00e+00 | 4.971 | 1 | 1 | 92 |
GO:0008289 | lipid binding | 3.62e-02 | 1.00e+00 | 4.766 | 1 | 1 | 106 |
GO:0006897 | endocytosis | 3.62e-02 | 1.00e+00 | 4.766 | 1 | 7 | 106 |
GO:0030496 | midbody | 3.69e-02 | 1.00e+00 | 4.739 | 1 | 2 | 108 |
GO:0005815 | microtubule organizing center | 3.72e-02 | 1.00e+00 | 4.726 | 1 | 3 | 109 |
GO:0051056 | regulation of small GTPase mediated signal transduction | 3.92e-02 | 1.00e+00 | 4.649 | 1 | 3 | 115 |
GO:0000209 | protein polyubiquitination | 3.96e-02 | 1.00e+00 | 4.636 | 1 | 3 | 116 |
GO:0030036 | actin cytoskeleton organization | 4.19e-02 | 1.00e+00 | 4.552 | 1 | 3 | 123 |
GO:0006413 | translational initiation | 4.46e-02 | 1.00e+00 | 4.461 | 1 | 7 | 131 |
GO:0005911 | cell-cell junction | 4.63e-02 | 1.00e+00 | 4.407 | 1 | 2 | 136 |
GO:0010628 | positive regulation of gene expression | 4.96e-02 | 1.00e+00 | 4.304 | 1 | 7 | 146 |
GO:0000082 | G1/S transition of mitotic cell cycle | 5.06e-02 | 1.00e+00 | 4.275 | 1 | 3 | 149 |
GO:0042981 | regulation of apoptotic process | 5.09e-02 | 1.00e+00 | 4.265 | 1 | 4 | 150 |
GO:0007601 | visual perception | 5.33e-02 | 1.00e+00 | 4.200 | 1 | 5 | 157 |
GO:0043005 | neuron projection | 5.33e-02 | 1.00e+00 | 4.200 | 1 | 3 | 157 |
GO:0034641 | cellular nitrogen compound metabolic process | 5.79e-02 | 1.00e+00 | 4.076 | 1 | 2 | 171 |
GO:0007173 | epidermal growth factor receptor signaling pathway | 6.38e-02 | 1.00e+00 | 3.932 | 1 | 5 | 189 |
GO:0003924 | GTPase activity | 6.65e-02 | 1.00e+00 | 3.872 | 1 | 7 | 197 |
GO:0001701 | in utero embryonic development | 6.78e-02 | 1.00e+00 | 3.843 | 1 | 8 | 201 |
GO:0046872 | metal ion binding | 6.82e-02 | 1.00e+00 | 2.142 | 2 | 29 | 1307 |
GO:0006184 | GTP catabolic process | 7.20e-02 | 1.00e+00 | 3.753 | 1 | 7 | 214 |
GO:0016071 | mRNA metabolic process | 7.50e-02 | 1.00e+00 | 3.693 | 1 | 8 | 223 |
GO:0006412 | translation | 7.72e-02 | 1.00e+00 | 3.649 | 1 | 8 | 230 |
GO:0043025 | neuronal cell body | 8.21e-02 | 1.00e+00 | 3.558 | 1 | 9 | 245 |
GO:0016070 | RNA metabolic process | 8.28e-02 | 1.00e+00 | 3.546 | 1 | 8 | 247 |
GO:0007264 | small GTPase mediated signal transduction | 9.31e-02 | 1.00e+00 | 3.370 | 1 | 3 | 279 |
GO:0005515 | protein binding | 1.01e-01 | 1.00e+00 | 0.938 | 4 | 198 | 6024 |
GO:0005525 | GTP binding | 1.03e-01 | 1.00e+00 | 3.218 | 1 | 12 | 310 |
GO:0019901 | protein kinase binding | 1.05e-01 | 1.00e+00 | 3.186 | 1 | 18 | 317 |
GO:0007411 | axon guidance | 1.06e-01 | 1.00e+00 | 3.177 | 1 | 5 | 319 |
GO:0016020 | membrane | 1.07e-01 | 1.00e+00 | 1.779 | 2 | 46 | 1681 |
GO:0005813 | centrosome | 1.08e-01 | 1.00e+00 | 3.145 | 1 | 7 | 326 |
GO:0007268 | synaptic transmission | 1.10e-01 | 1.00e+00 | 3.119 | 1 | 5 | 332 |
GO:0003723 | RNA binding | 1.13e-01 | 1.00e+00 | 3.076 | 1 | 18 | 342 |
GO:0000139 | Golgi membrane | 1.19e-01 | 1.00e+00 | 2.998 | 1 | 7 | 361 |
GO:0005925 | focal adhesion | 1.21e-01 | 1.00e+00 | 2.978 | 1 | 9 | 366 |
GO:0000278 | mitotic cell cycle | 1.28e-01 | 1.00e+00 | 2.883 | 1 | 15 | 391 |
GO:0043066 | negative regulation of apoptotic process | 1.39e-01 | 1.00e+00 | 2.766 | 1 | 16 | 424 |
GO:0007596 | blood coagulation | 1.48e-01 | 1.00e+00 | 2.664 | 1 | 11 | 455 |
GO:0044267 | cellular protein metabolic process | 1.54e-01 | 1.00e+00 | 2.605 | 1 | 20 | 474 |
GO:0042802 | identical protein binding | 1.57e-01 | 1.00e+00 | 2.575 | 1 | 19 | 484 |
GO:0016032 | viral process | 1.72e-01 | 1.00e+00 | 2.433 | 1 | 26 | 534 |
GO:0006915 | apoptotic process | 1.78e-01 | 1.00e+00 | 2.378 | 1 | 12 | 555 |
GO:0045087 | innate immune response | 1.90e-01 | 1.00e+00 | 2.275 | 1 | 15 | 596 |
GO:0070062 | extracellular vesicular exosome | 1.96e-01 | 1.00e+00 | 1.265 | 2 | 57 | 2400 |
GO:0006355 | regulation of transcription, DNA-templated | 3.01e-01 | 1.00e+00 | 1.533 | 1 | 43 | 997 |
GO:0044822 | poly(A) RNA binding | 3.16e-01 | 1.00e+00 | 1.450 | 1 | 50 | 1056 |
GO:0005654 | nucleoplasm | 3.23e-01 | 1.00e+00 | 1.415 | 1 | 64 | 1082 |
GO:0044281 | small molecule metabolic process | 3.55e-01 | 1.00e+00 | 1.252 | 1 | 20 | 1211 |
GO:0003677 | DNA binding | 3.57e-01 | 1.00e+00 | 1.244 | 1 | 49 | 1218 |
GO:0006351 | transcription, DNA-templated | 4.10e-01 | 1.00e+00 | 0.996 | 1 | 57 | 1446 |
GO:0005886 | plasma membrane | 6.27e-01 | 1.00e+00 | 0.160 | 1 | 49 | 2582 |
GO:0005737 | cytoplasm | 7.80e-01 | 1.00e+00 | -0.385 | 1 | 124 | 3767 |
GO:0005634 | nucleus | 8.50e-01 | 1.00e+00 | -0.660 | 1 | 159 | 4559 |