| GO:0005515 | protein binding | 198 | 6024 | 
| GO:0005737 | cytoplasm | 124 | 3767 | 
| GO:0002830 | positive regulation of type 2 immune response | 1 | 5 | 
| GO:0000187 | activation of MAPK activity | 3 | 90 | 
| GO:0032735 | positive regulation of interleukin-12 production | 2 | 25 | 
| GO:0032500 | muramyl dipeptide binding | 1 | 1 | 
| GO:0035419 | activation of MAPK activity involved in innate immune response | 1 | 1 | 
| GO:0002606 | positive regulation of dendritic cell antigen processing and presentation | 1 | 7 | 
| GO:0005829 | cytosol | 86 | 2496 | 
| GO:0051403 | stress-activated MAPK cascade | 2 | 54 | 
| GO:2000110 | negative regulation of macrophage apoptotic process | 1 | 4 | 
| GO:0006952 | defense response | 2 | 47 | 
| GO:0050700 | CARD domain binding | 1 | 8 | 
| GO:0043330 | response to exogenous dsRNA | 1 | 24 | 
| GO:0034142 | toll-like receptor 4 signaling pathway | 4 | 96 | 
| GO:0002755 | MyD88-dependent toll-like receptor signaling pathway | 5 | 80 | 
| GO:0050731 | positive regulation of peptidyl-tyrosine phosphorylation | 2 | 75 | 
| GO:0043123 | positive regulation of I-kappaB kinase/NF-kappaB signaling | 4 | 145 | 
| GO:0051092 | positive regulation of NF-kappaB transcription factor activity | 5 | 124 | 
| GO:0038124 | toll-like receptor TLR6:TLR2 signaling pathway | 4 | 71 | 
| GO:0070374 | positive regulation of ERK1 and ERK2 cascade | 1 | 106 | 
| GO:0002367 | cytokine production involved in immune response | 1 | 1 | 
| GO:0034146 | toll-like receptor 5 signaling pathway | 4 | 65 | 
| GO:0034134 | toll-like receptor 2 signaling pathway | 4 | 73 | 
| GO:0032496 | response to lipopolysaccharide | 4 | 121 | 
| GO:0009986 | cell surface | 9 | 402 | 
| GO:0032701 | negative regulation of interleukin-18 production | 1 | 1 | 
| GO:0032495 | response to muramyl dipeptide | 2 | 9 | 
| GO:0005886 | plasma membrane | 49 | 2582 | 
| GO:0051353 | positive regulation of oxidoreductase activity | 1 | 7 | 
| GO:0034162 | toll-like receptor 9 signaling pathway | 4 | 72 | 
| GO:0006965 | positive regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria | 1 | 2 | 
| GO:0038123 | toll-like receptor TLR1:TLR2 signaling pathway | 4 | 71 | 
| GO:0035666 | TRIF-dependent toll-like receptor signaling pathway | 3 | 76 | 
| GO:0016045 | detection of bacterium | 1 | 14 | 
| GO:0032088 | negative regulation of NF-kappaB transcription factor activity | 3 | 63 | 
| GO:0030277 | maintenance of gastrointestinal epithelium | 2 | 11 | 
| GO:0045944 | positive regulation of transcription from RNA polymerase II promoter | 41 | 789 | 
| GO:0005524 | ATP binding | 31 | 1298 | 
| GO:0031982 | vesicle | 3 | 131 | 
| GO:0009595 | detection of biotic stimulus | 1 | 3 | 
| GO:0050679 | positive regulation of epithelial cell proliferation | 2 | 54 | 
| GO:0035872 | nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway | 1 | 43 | 
| GO:0090022 | regulation of neutrophil chemotaxis | 1 | 3 | 
| GO:0035556 | intracellular signal transduction | 9 | 303 | 
| GO:0071224 | cellular response to peptidoglycan | 1 | 4 | 
| GO:0032874 | positive regulation of stress-activated MAPK cascade | 1 | 12 | 
| GO:0002224 | toll-like receptor signaling pathway | 4 | 109 | 
| GO:0070423 | nucleotide-binding oligomerization domain containing signaling pathway | 1 | 25 | 
| GO:0032498 | detection of muramyl dipeptide | 1 | 1 | 
| GO:0070431 | nucleotide-binding oligomerization domain containing 2 signaling pathway | 1 | 5 | 
| GO:0050718 | positive regulation of interleukin-1 beta secretion | 1 | 18 | 
| GO:0008180 | COP9 signalosome | 7 | 34 | 
| GO:0042742 | defense response to bacterium | 5 | 60 | 
| GO:0050830 | defense response to Gram-positive bacterium | 3 | 45 | 
| GO:0044130 | negative regulation of growth of symbiont in host | 1 | 17 | 
| GO:0002710 | negative regulation of T cell mediated immunity | 1 | 1 | 
| GO:0060585 | positive regulation of prostaglandin-endoperoxide synthase activity | 1 | 3 | 
| GO:0032695 | negative regulation of interleukin-12 production | 1 | 12 | 
| GO:0034166 | toll-like receptor 10 signaling pathway | 4 | 65 | 
| GO:0019901 | protein kinase binding | 18 | 317 | 
| GO:0071225 | cellular response to muramyl dipeptide | 1 | 3 | 
| GO:0046645 | positive regulation of gamma-delta T cell activation | 1 | 1 | 
| GO:0031398 | positive regulation of protein ubiquitination | 1 | 52 | 
| GO:0032755 | positive regulation of interleukin-6 production | 2 | 36 | 
| GO:0002732 | positive regulation of dendritic cell cytokine production | 1 | 1 | 
| GO:0034136 | negative regulation of toll-like receptor 2 signaling pathway | 1 | 3 | 
| GO:0046330 | positive regulation of JNK cascade | 2 | 55 | 
| GO:0007254 | JNK cascade | 2 | 49 | 
| GO:0051259 | protein oligomerization | 2 | 39 | 
| GO:0051770 | positive regulation of nitric-oxide synthase biosynthetic process | 1 | 14 | 
| GO:0043552 | positive regulation of phosphatidylinositol 3-kinase activity | 3 | 26 | 
| GO:0032703 | negative regulation of interleukin-2 production | 1 | 10 | 
| GO:0032720 | negative regulation of tumor necrosis factor production | 2 | 27 | 
| GO:0045087 | innate immune response | 15 | 596 | 
| GO:0050766 | positive regulation of phagocytosis | 1 | 23 | 
| GO:0007584 | response to nutrient | 3 | 71 | 
| GO:2000363 | positive regulation of prostaglandin-E synthase activity | 1 | 1 | 
| GO:0034138 | toll-like receptor 3 signaling pathway | 3 | 79 | 
| GO:0032689 | negative regulation of interferon-gamma production | 1 | 24 | 
| GO:0032731 | positive regulation of interleukin-1 beta production | 1 | 7 | 
| GO:0043234 | protein complex | 11 | 295 | 
| GO:0071407 | cellular response to organic cyclic compound | 3 | 38 | 
| GO:0005856 | cytoskeleton | 9 | 291 | 
| GO:0050871 | positive regulation of B cell activation | 1 | 4 | 
| GO:0032733 | positive regulation of interleukin-10 production | 2 | 19 | 
| GO:0002381 | immunoglobulin production involved in immunoglobulin mediated immune response | 1 | 6 | 
| GO:0032740 | positive regulation of interleukin-17 production | 2 | 11 | 
| GO:0002227 | innate immune response in mucosa | 2 | 16 | 
| GO:0002756 | MyD88-independent toll-like receptor signaling pathway | 3 | 78 | 
| GO:0002862 | negative regulation of inflammatory response to antigenic stimulus | 1 | 6 | 
| GO:0071608 | macrophage inflammatory protein-1 alpha production | 1 | 1 | 
| GO:0032760 | positive regulation of tumor necrosis factor production | 2 | 37 | 
| GO:0019899 | enzyme binding | 9 | 277 | 
| GO:0002925 | positive regulation of humoral immune response mediated by circulating immunoglobulin | 1 | 5 | 
| GO:0050727 | regulation of inflammatory response | 1 | 45 | 
| GO:0045747 | positive regulation of Notch signaling pathway | 1 | 21 | 
| GO:0042834 | peptidoglycan binding | 1 | 9 |