Cibi Main Projects and Tools

Research Projects
  • HTS-Net project [High Throughput Screening - Network] is a network-based large scale siRNA assays analysis.
  • ITI project [Interactome-Transcriptome Integration] is a network-based robust classification of transcription profiles in cancer by large scale data integration of protein-protein interaction with DNA microarray data. See related publication Garcia et al (Bioinformatics).
  • Djeen [Database for Joomla!'s Extensible Engine] is a Joomla! component to manage an external database and file storing for experimental data. See related publication Stahl et al (BMC Res. Notes).
  • Infocyt. The goal of this project is to develop methodologies to automate high throughout analysis in multiparametric flow cytometry.
  • ClutrFree is a stand-alone application allowing for cluster data visualisation, GO enrichement calculation, and multiple clustering algorithm comparison through graph display. See related publications Bidaut and Ochs (Bioinformatics) and Ochs et al (Methods in Molecular Biology).
  • Scann [Stem Cell characterisation by Artificial Neural Networks] . Transcriptome data integration for isolation of developmental biomarkers in adult stem cells. See related publications Bidaut and Stoeckert (Methods in Enzymology) and Bidaut and Stoeckert (PSB 2009).
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