reg-snw-10038

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
chia-screen-data-Fav	2.226	2.12e-07	3.99e-02	3.05e-02

chia-screen-data-Fav-reg-snw-10038 subnetwork

Genes (10)

Gene Symbol	Entrez Gene ID	Frequency	chia-screen-data-Fav gene score	Best subnetwork score	Degree	Transcription factor	Chia-Hits Primary	Chia-Hits Secondary
NDUFA4L2	56901	44	-2.477	2.459	21	-	Yes	-
RIN2	54453	2	-1.746	2.299	44	TF	-	-
FOXJ3	22887	15	-2.407	2.369	87	TF	Yes	Yes
FBXL6	26233	28	-2.253	2.689	22	-	Yes	-
CENPA	1058	27	-2.185	2.393	205	TF	Yes	-
AHCTF1	25909	6	-2.069	2.326	31	TF	Yes	-
SUV39H2	79723	27	-2.307	2.410	21	-	Yes	Yes
[ PARP2 ]	10038	2	-1.540	2.276	23	TF	-	-
ZDHHC20	253832	9	-2.673	2.326	25	-	Yes	-
CGGBP1	8545	5	-2.601	2.326	5	-	Yes	Yes

Interactions (9)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
AHCTF1	25909	ZDHHC20	253832	pd	>	reg.ITFP.txt: no annot
CENPA	1058	SUV39H2	79723	pd	>	reg.ITFP.txt: no annot
FOXJ3	22887	RIN2	54453	pd	<>	reg.ITFP.txt: no annot
CENPA	1058	FBXL6	26233	pd	>	reg.ITFP.txt: no annot
PARP2	10038	RIN2	54453	pd	<>	reg.ITFP.txt: no annot
CENPA	1058	PARP2	10038	pd	<>	reg.ITFP.txt: no annot
CGGBP1	8545	AHCTF1	25909	pd	<	reg.ITFP.txt: no annot
CENPA	1058	NDUFA4L2	56901	pd	>	reg.ITFP.txt: no annot
AHCTF1	25909	RIN2	54453	pd	<>	reg.ITFP.txt: no annot

Related GO terms (76)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0000775	chromosome, centromeric region	7.58e-04	1.00e+00	5.574	2	6	41
GO:0000939	condensed chromosome inner kinetochore	1.02e-03	1.00e+00	9.931	1	1	1
GO:0000785	chromatin	1.57e-03	1.00e+00	5.049	2	6	59
GO:0036123	histone H3-K9 dimethylation	3.07e-03	1.00e+00	8.347	1	1	3
GO:0000778	condensed nuclear chromosome kinetochore	3.07e-03	1.00e+00	8.347	1	2	3
GO:0071459	protein localization to chromosome, centromeric region	3.07e-03	1.00e+00	8.347	1	1	3
GO:0006333	chromatin assembly or disassembly	4.09e-03	1.00e+00	7.931	1	1	4
GO:0036124	histone H3-K9 trimethylation	4.09e-03	1.00e+00	7.931	1	2	4
GO:0042754	negative regulation of circadian rhythm	6.13e-03	1.00e+00	7.347	1	2	6
GO:0046974	histone methyltransferase activity (H3-K9 specific)	6.13e-03	1.00e+00	7.347	1	1	6
GO:0007140	male meiosis	7.15e-03	1.00e+00	7.124	1	1	7
GO:0000780	condensed nuclear chromosome, centromeric region	7.15e-03	1.00e+00	7.124	1	1	7
GO:0051382	kinetochore assembly	7.15e-03	1.00e+00	7.124	1	2	7
GO:0051292	nuclear pore complex assembly	8.17e-03	1.00e+00	6.931	1	4	8
GO:0031080	nuclear pore outer ring	9.18e-03	1.00e+00	6.762	1	2	9
GO:0006471	protein ADP-ribosylation	1.02e-02	1.00e+00	6.610	1	1	10
GO:0000132	establishment of mitotic spindle orientation	1.22e-02	1.00e+00	6.347	1	2	12
GO:0016409	palmitoyltransferase activity	1.22e-02	1.00e+00	6.347	1	1	12
GO:0003950	NAD+ ADP-ribosyltransferase activity	1.32e-02	1.00e+00	6.231	1	1	13
GO:0018345	protein palmitoylation	1.53e-02	1.00e+00	6.025	1	1	15
GO:0017112	Rab guanyl-nucleotide exchange factor activity	1.53e-02	1.00e+00	6.025	1	1	15
GO:0001227	RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription	1.73e-02	1.00e+00	5.844	1	2	17
GO:0019706	protein-cysteine S-palmitoyltransferase activity	1.73e-02	1.00e+00	5.844	1	1	17
GO:0005083	small GTPase regulator activity	1.73e-02	1.00e+00	5.844	1	2	17
GO:0005720	nuclear heterochromatin	2.03e-02	1.00e+00	5.610	1	3	20
GO:0034080	CENP-A containing nucleosome assembly	2.03e-02	1.00e+00	5.610	1	2	20
GO:0000976	transcription regulatory region sequence-specific DNA binding	2.53e-02	1.00e+00	5.288	1	3	25
GO:0003682	chromatin binding	2.60e-02	1.00e+00	2.954	2	15	252
GO:0097191	extrinsic apoptotic signaling pathway	3.03e-02	1.00e+00	5.025	1	1	30
GO:0006284	base-excision repair	3.23e-02	1.00e+00	4.931	1	3	32
GO:0000910	cytokinesis	3.33e-02	1.00e+00	4.887	1	2	33
GO:0000786	nucleosome	3.43e-02	1.00e+00	4.844	1	2	34
GO:0032851	positive regulation of Rab GTPase activity	3.63e-02	1.00e+00	4.762	1	2	36
GO:0048511	rhythmic process	3.83e-02	1.00e+00	4.684	1	5	38
GO:0000278	mitotic cell cycle	3.91e-02	1.00e+00	2.637	2	28	314
GO:0050790	regulation of catalytic activity	4.52e-02	1.00e+00	4.440	1	2	45
GO:0051028	mRNA transport	4.71e-02	1.00e+00	4.377	1	5	47
GO:0006334	nucleosome assembly	5.10e-02	1.00e+00	4.259	1	4	51
GO:0005643	nuclear pore	5.10e-02	1.00e+00	4.259	1	12	51
GO:0005654	nucleoplasm	5.35e-02	1.00e+00	1.742	3	68	876
GO:0006338	chromatin remodeling	5.49e-02	1.00e+00	4.150	1	7	55
GO:0000777	condensed chromosome kinetochore	5.69e-02	1.00e+00	4.099	1	6	57
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	6.27e-02	1.00e+00	3.954	1	2	63
GO:0003677	DNA binding	6.50e-02	1.00e+00	1.629	3	52	947
GO:0006897	endocytosis	6.66e-02	1.00e+00	3.865	1	2	67
GO:0005096	GTPase activator activity	6.75e-02	1.00e+00	3.844	1	2	68
GO:0016363	nuclear matrix	7.23e-02	1.00e+00	3.742	1	10	73
GO:0071456	cellular response to hypoxia	7.52e-02	1.00e+00	3.684	1	2	76
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	7.64e-02	1.00e+00	2.099	2	29	456
GO:0003690	double-stranded DNA binding	8.19e-02	1.00e+00	3.556	1	6	83
GO:0006351	transcription, DNA-templated	8.87e-02	1.00e+00	1.445	3	47	1076
GO:0003700	sequence-specific DNA binding transcription factor activity	1.16e-01	1.00e+00	1.747	2	22	582
GO:0031965	nuclear membrane	1.25e-01	1.00e+00	2.909	1	8	130
GO:0006355	regulation of transcription, DNA-templated	1.63e-01	1.00e+00	1.450	2	31	715
GO:0007264	small GTPase mediated signal transduction	1.65e-01	1.00e+00	2.489	1	8	174
GO:0008270	zinc ion binding	1.68e-01	1.00e+00	1.426	2	39	727
GO:0004842	ubiquitin-protein transferase activity	1.69e-01	1.00e+00	2.448	1	17	179
GO:0005575	cellular_component	1.76e-01	1.00e+00	2.385	1	4	187
GO:0016567	protein ubiquitination	1.77e-01	1.00e+00	2.377	1	14	188
GO:0015031	protein transport	1.90e-01	1.00e+00	2.266	1	10	203
GO:0030154	cell differentiation	1.90e-01	1.00e+00	2.259	1	5	204
GO:0006281	DNA repair	1.90e-01	1.00e+00	2.266	1	24	203
GO:0005634	nucleus	2.11e-01	1.00e+00	0.589	5	158	3246
GO:0006508	proteolysis	2.40e-01	1.00e+00	1.887	1	11	264
GO:0046982	protein heterodimerization activity	2.41e-01	1.00e+00	1.882	1	11	265
GO:0043565	sequence-specific DNA binding	2.49e-01	1.00e+00	1.828	1	8	275
GO:0045892	negative regulation of transcription, DNA-templated	2.81e-01	1.00e+00	1.623	1	17	317
GO:0005730	nucleolus	3.60e-01	1.00e+00	0.682	2	74	1217
GO:0016032	viral process	3.61e-01	1.00e+00	1.190	1	30	428
GO:0005829	cytosol	5.71e-01	1.00e+00	0.128	2	88	1787
GO:0016020	membrane	7.33e-01	1.00e+00	-0.306	1	56	1207
GO:0016021	integral component of membrane	8.17e-01	1.00e+00	-0.644	1	19	1526
GO:0070062	extracellular vesicular exosome	8.41e-01	1.00e+00	-0.749	1	51	1641
GO:0005515	protein binding	8.66e-01	1.00e+00	-0.493	3	198	4124
GO:0005886	plasma membrane	8.67e-01	1.00e+00	-0.869	1	46	1784
GO:0005737	cytoplasm	9.57e-01	1.00e+00	-1.431	1	127	2633

chia-Fav

reg-snw-10038

Statistics

Genes (10)

Interactions (9)

Related GO terms (76)