reg-snw-1964

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
tai-screen-luciferase	4.532	1.75e-22	1.10e-03	1.69e-03

tai-screen-luciferase-reg-snw-1964 subnetwork

Genes (7)

Gene Symbol	Entrez Gene ID	Frequency	tai-screen-luciferase gene score	Best subnetwork score	Degree	Transcription factor	List-Gonzales GI	Tai-Hits
YEATS4	8089	1	-4.444	4.532	18	-	Yes	Yes
RPS16	6217	3	-5.444	4.880	3	-	-	-
EIF2S3	1968	1	-3.144	4.532	13	-	Yes	-
RPS27A	6233	3	-5.631	4.880	2	-	Yes	-
[ EIF1AX ]	1964	1	-3.005	4.532	43	TF	Yes	-
RPS6	6194	3	-5.603	4.880	9	-	Yes	-
EIF3M	10480	3	4.451	4.880	55	TF	Yes	-

Interactions (6)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
EIF1AX	1964	YEATS4	8089	pd	>	reg.ITFP.txt: no annot
RPS27A	6233	EIF3M	10480	pd	<	reg.ITFP.txt: no annot
RPS16	6217	EIF3M	10480	pd	<	reg.ITFP.txt: no annot
RPS6	6194	EIF3M	10480	pd	<	reg.ITFP.txt: no annot
EIF1AX	1964	EIF2S3	1968	pd	>	reg.ITFP.txt: no annot
EIF1AX	1964	EIF3M	10480	pd	<>	reg.ITFP.txt: no annot

Related GO terms (147)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0006413	translational initiation	6.47e-12	6.32e-08	6.402	6	12	99
GO:0006412	translation	3.88e-08	3.79e-04	5.292	5	13	178
GO:0015935	small ribosomal subunit	4.95e-08	4.83e-04	8.446	3	4	12
GO:0022627	cytosolic small ribosomal subunit	9.08e-07	8.87e-03	7.124	3	6	30
GO:0044267	cellular protein metabolic process	1.17e-06	1.14e-02	4.309	5	13	352
GO:0003743	translation initiation factor activity	1.73e-06	1.69e-02	6.822	3	5	37
GO:0019083	viral transcription	7.98e-06	7.79e-02	6.100	3	7	61
GO:0006415	translational termination	8.79e-06	8.59e-02	6.054	3	7	63
GO:0010467	gene expression	9.28e-06	9.07e-02	3.705	5	17	535
GO:0006414	translational elongation	1.16e-05	1.13e-01	5.922	3	7	69
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	1.61e-05	1.58e-01	5.764	3	7	77
GO:0019058	viral life cycle	1.68e-05	1.64e-01	5.746	3	8	78
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	2.10e-05	2.05e-01	5.639	3	7	84
GO:0042274	ribosomal small subunit biogenesis	2.42e-05	2.36e-01	7.987	2	3	11
GO:0003735	structural constituent of ribosome	4.58e-05	4.48e-01	5.263	3	8	109
GO:0008135	translation factor activity, nucleic acid binding	4.60e-05	4.50e-01	7.539	2	4	15
GO:0016071	mRNA metabolic process	1.72e-04	1.00e+00	4.622	3	11	170
GO:0016070	RNA metabolic process	2.32e-04	1.00e+00	4.476	3	11	188
GO:0002183	cytoplasmic translational initiation	7.17e-04	1.00e+00	10.446	1	1	1
GO:0022605	oogenesis stage	7.17e-04	1.00e+00	10.446	1	1	1
GO:0006364	rRNA processing	9.53e-04	1.00e+00	5.380	2	5	67
GO:0044822	poly(A) RNA binding	1.27e-03	1.00e+00	2.804	4	25	799
GO:0016032	viral process	2.56e-03	1.00e+00	3.290	3	13	428
GO:0019082	viral protein processing	2.86e-03	1.00e+00	8.446	1	1	4
GO:0005829	cytosol	3.09e-03	1.00e+00	1.965	5	33	1787
GO:0000082	G1/S transition of mitotic cell cycle	3.27e-03	1.00e+00	4.480	2	6	125
GO:0000028	ribosomal small subunit assembly	3.58e-03	1.00e+00	8.124	1	3	5
GO:0002309	T cell proliferation involved in immune response	3.58e-03	1.00e+00	8.124	1	1	5
GO:0006924	activation-induced cell death of T cells	4.29e-03	1.00e+00	7.861	1	2	6
GO:0075733	intracellular transport of virus	5.01e-03	1.00e+00	7.639	1	2	7
GO:0071541	eukaryotic translation initiation factor 3 complex, eIF3m	5.01e-03	1.00e+00	7.639	1	1	7
GO:0019068	virion assembly	5.01e-03	1.00e+00	7.639	1	1	7
GO:0007067	mitotic nuclear division	5.64e-03	1.00e+00	4.080	2	5	165
GO:0031929	TOR signaling	6.44e-03	1.00e+00	7.276	1	1	9
GO:0032479	regulation of type I interferon production	6.44e-03	1.00e+00	7.276	1	1	9
GO:0043968	histone H2A acetylation	7.15e-03	1.00e+00	7.124	1	1	10
GO:0016282	eukaryotic 43S preinitiation complex	7.86e-03	1.00e+00	6.987	1	1	11
GO:0033290	eukaryotic 48S preinitiation complex	7.86e-03	1.00e+00	6.987	1	1	11
GO:0043065	positive regulation of apoptotic process	8.35e-03	1.00e+00	3.788	2	3	202
GO:0035267	NuA4 histone acetyltransferase complex	8.57e-03	1.00e+00	6.861	1	2	12
GO:0031369	translation initiation factor binding	9.28e-03	1.00e+00	6.746	1	1	13
GO:0048821	erythrocyte development	9.28e-03	1.00e+00	6.746	1	2	13
GO:0005852	eukaryotic translation initiation factor 3 complex	9.28e-03	1.00e+00	6.746	1	1	13
GO:0001731	formation of translation preinitiation complex	1.00e-02	1.00e+00	6.639	1	1	14
GO:0005978	glycogen biosynthetic process	1.07e-02	1.00e+00	6.539	1	1	15
GO:0007220	Notch receptor processing	1.14e-02	1.00e+00	6.446	1	1	16
GO:0070423	nucleotide-binding oligomerization domain containing signaling pathway	1.21e-02	1.00e+00	6.359	1	1	17
GO:0007369	gastrulation	1.21e-02	1.00e+00	6.359	1	1	17
GO:0005844	polysome	1.35e-02	1.00e+00	6.198	1	1	19
GO:0036464	cytoplasmic ribonucleoprotein granule	1.35e-02	1.00e+00	6.198	1	4	19
GO:0032480	negative regulation of type I interferon production	1.43e-02	1.00e+00	6.124	1	1	20
GO:0043967	histone H4 acetylation	1.57e-02	1.00e+00	5.987	1	2	22
GO:0061418	regulation of transcription from RNA polymerase II promoter in response to hypoxia	1.57e-02	1.00e+00	5.987	1	1	22
GO:0007093	mitotic cell cycle checkpoint	1.78e-02	1.00e+00	5.802	1	2	25
GO:0001890	placenta development	1.85e-02	1.00e+00	5.746	1	1	26
GO:0007249	I-kappaB kinase/NF-kappaB signaling	1.85e-02	1.00e+00	5.746	1	2	26
GO:0033077	T cell differentiation in thymus	1.85e-02	1.00e+00	5.746	1	1	26
GO:0042059	negative regulation of epidermal growth factor receptor signaling pathway	1.99e-02	1.00e+00	5.639	1	2	28
GO:0016197	endosomal transport	1.99e-02	1.00e+00	5.639	1	1	28
GO:0043066	negative regulation of apoptotic process	2.04e-02	1.00e+00	3.115	2	6	322
GO:0006446	regulation of translational initiation	2.06e-02	1.00e+00	5.588	1	2	29
GO:0035872	nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway	2.20e-02	1.00e+00	5.492	1	1	31
GO:0007254	JNK cascade	2.41e-02	1.00e+00	5.359	1	1	34
GO:0044297	cell body	2.48e-02	1.00e+00	5.317	1	1	35
GO:0005515	protein binding	2.53e-02	1.00e+00	1.021	6	50	4124
GO:0030666	endocytic vesicle membrane	2.55e-02	1.00e+00	5.276	1	1	36
GO:0040008	regulation of growth	2.62e-02	1.00e+00	5.237	1	1	37
GO:0051403	stress-activated MAPK cascade	2.97e-02	1.00e+00	5.054	1	2	42
GO:0032481	positive regulation of type I interferon production	3.39e-02	1.00e+00	4.861	1	1	48
GO:0034146	toll-like receptor 5 signaling pathway	3.53e-02	1.00e+00	4.802	1	2	50
GO:0034166	toll-like receptor 10 signaling pathway	3.53e-02	1.00e+00	4.802	1	2	50
GO:0051436	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	3.67e-02	1.00e+00	4.746	1	3	52
GO:0030512	negative regulation of transforming growth factor beta receptor signaling pathway	3.74e-02	1.00e+00	4.718	1	1	53
GO:0006977	DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	3.74e-02	1.00e+00	4.718	1	3	53
GO:0038123	toll-like receptor TLR1:TLR2 signaling pathway	3.88e-02	1.00e+00	4.665	1	2	55
GO:0034162	toll-like receptor 9 signaling pathway	3.88e-02	1.00e+00	4.665	1	2	55
GO:0038124	toll-like receptor TLR6:TLR2 signaling pathway	3.88e-02	1.00e+00	4.665	1	2	55
GO:0034134	toll-like receptor 2 signaling pathway	3.95e-02	1.00e+00	4.639	1	2	56
GO:0051437	positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	3.95e-02	1.00e+00	4.639	1	3	56
GO:0002479	antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent	4.02e-02	1.00e+00	4.613	1	3	57
GO:0035666	TRIF-dependent toll-like receptor signaling pathway	4.02e-02	1.00e+00	4.613	1	2	57
GO:0002756	MyD88-independent toll-like receptor signaling pathway	4.09e-02	1.00e+00	4.588	1	2	58
GO:0034138	toll-like receptor 3 signaling pathway	4.15e-02	1.00e+00	4.563	1	2	59
GO:0042593	glucose homeostasis	4.22e-02	1.00e+00	4.539	1	1	60
GO:0051439	regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	4.22e-02	1.00e+00	4.539	1	3	60
GO:0002755	MyD88-dependent toll-like receptor signaling pathway	4.29e-02	1.00e+00	4.515	1	2	61
GO:0042590	antigen processing and presentation of exogenous peptide antigen via MHC class I	4.29e-02	1.00e+00	4.515	1	3	61
GO:0000187	activation of MAPK activity	4.43e-02	1.00e+00	4.469	1	2	63
GO:0016020	membrane	4.49e-02	1.00e+00	1.794	3	25	1207
GO:0031145	anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process	4.57e-02	1.00e+00	4.424	1	3	65
GO:0050852	T cell receptor signaling pathway	4.78e-02	1.00e+00	4.359	1	1	68
GO:0005200	structural constituent of cytoskeleton	4.78e-02	1.00e+00	4.359	1	4	68
GO:0006325	chromatin organization	4.91e-02	1.00e+00	4.317	1	2	70
GO:0002474	antigen processing and presentation of peptide antigen via MHC class I	4.91e-02	1.00e+00	4.317	1	4	70
GO:0016363	nuclear matrix	5.12e-02	1.00e+00	4.256	1	2	73
GO:0034142	toll-like receptor 4 signaling pathway	5.12e-02	1.00e+00	4.256	1	2	73
GO:0071456	cellular response to hypoxia	5.32e-02	1.00e+00	4.198	1	1	76
GO:0006006	glucose metabolic process	5.60e-02	1.00e+00	4.124	1	2	80
GO:0030529	ribonucleoprotein complex	5.73e-02	1.00e+00	4.088	1	3	82
GO:0097190	apoptotic signaling pathway	5.80e-02	1.00e+00	4.071	1	1	83
GO:0002224	toll-like receptor signaling pathway	5.80e-02	1.00e+00	4.071	1	2	83
GO:0051092	positive regulation of NF-kappaB transcription factor activity	6.21e-02	1.00e+00	3.970	1	1	89
GO:0061024	membrane organization	6.21e-02	1.00e+00	3.970	1	3	89
GO:0000209	protein polyubiquitination	6.41e-02	1.00e+00	3.922	1	3	92
GO:0007219	Notch signaling pathway	6.62e-02	1.00e+00	3.876	1	2	95
GO:0034220	ion transmembrane transport	6.68e-02	1.00e+00	3.861	1	1	96
GO:0000086	G2/M transition of mitotic cell cycle	6.75e-02	1.00e+00	3.846	1	3	97
GO:0008286	insulin receptor signaling pathway	6.75e-02	1.00e+00	3.846	1	2	97
GO:0010008	endosome membrane	7.09e-02	1.00e+00	3.774	1	1	102
GO:0007179	transforming growth factor beta receptor signaling pathway	7.42e-02	1.00e+00	3.705	1	2	107
GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	7.49e-02	1.00e+00	3.691	1	1	108
GO:0042981	regulation of apoptotic process	7.76e-02	1.00e+00	3.639	1	4	112
GO:0008543	fibroblast growth factor receptor signaling pathway	7.89e-02	1.00e+00	3.613	1	1	114
GO:0008022	protein C-terminus binding	7.96e-02	1.00e+00	3.601	1	1	115
GO:0003924	GTPase activity	8.23e-02	1.00e+00	3.551	1	3	119
GO:0006184	GTP catabolic process	8.96e-02	1.00e+00	3.424	1	3	130
GO:0038095	Fc-epsilon receptor signaling pathway	9.09e-02	1.00e+00	3.402	1	1	132
GO:0007173	epidermal growth factor receptor signaling pathway	9.75e-02	1.00e+00	3.296	1	3	142
GO:0070062	extracellular vesicular exosome	9.77e-02	1.00e+00	1.351	3	28	1641
GO:0006367	transcription initiation from RNA polymerase II promoter	1.10e-01	1.00e+00	3.115	1	3	161
GO:0030425	dendrite	1.13e-01	1.00e+00	3.071	1	3	166
GO:0019221	cytokine-mediated signaling pathway	1.17e-01	1.00e+00	3.020	1	4	172
GO:0005654	nucleoplasm	1.25e-01	1.00e+00	1.671	2	16	876
GO:0005975	carbohydrate metabolic process	1.26e-01	1.00e+00	2.907	1	1	186
GO:0005525	GTP binding	1.33e-01	1.00e+00	2.824	1	3	197
GO:0048011	neurotrophin TRK receptor signaling pathway	1.34e-01	1.00e+00	2.809	1	2	199
GO:0006281	DNA repair	1.37e-01	1.00e+00	2.781	1	2	203
GO:0019901	protein kinase binding	1.55e-01	1.00e+00	2.588	1	8	232
GO:0003723	RNA binding	1.64e-01	1.00e+00	2.498	1	6	247
GO:0006351	transcription, DNA-templated	1.75e-01	1.00e+00	1.375	2	15	1076
GO:0005925	focal adhesion	1.86e-01	1.00e+00	2.306	1	12	282
GO:0000278	mitotic cell cycle	2.05e-01	1.00e+00	2.151	1	9	314
GO:0055085	transmembrane transport	2.13e-01	1.00e+00	2.084	1	1	329
GO:0048471	perinuclear region of cytoplasm	2.22e-01	1.00e+00	2.020	1	7	344
GO:0045893	positive regulation of transcription, DNA-templated	2.41e-01	1.00e+00	1.888	1	6	377
GO:0006915	apoptotic process	2.60e-01	1.00e+00	1.763	1	4	411
GO:0045087	innate immune response	2.82e-01	1.00e+00	1.626	1	6	452
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	2.85e-01	1.00e+00	1.613	1	6	456
GO:0003700	sequence-specific DNA binding transcription factor activity	3.50e-01	1.00e+00	1.261	1	9	582
GO:0045944	positive regulation of transcription from RNA polymerase II promoter	3.80e-01	1.00e+00	1.115	1	8	644
GO:0044281	small molecule metabolic process	4.69e-01	1.00e+00	0.725	1	8	844
GO:0046872	metal ion binding	5.05e-01	1.00e+00	0.579	1	10	934
GO:0003677	DNA binding	5.10e-01	1.00e+00	0.559	1	12	947
GO:0005730	nucleolus	6.06e-01	1.00e+00	0.197	1	21	1217
GO:0005886	plasma membrane	7.57e-01	1.00e+00	-0.355	1	13	1784
GO:0005737	cytoplasm	8.89e-01	1.00e+00	-0.916	1	39	2633
GO:0005634	nucleus	9.41e-01	1.00e+00	-1.218	1	40	3246

Tai-Luciferase

reg-snw-1964

Statistics

Genes (7)

Interactions (6)

Related GO terms (147)