reg-snw-4904

Statistics

Dataset	Score	p-value 1	p-value 2	p-value 3
tai-screen-luciferase	5.516	1.01e-34	8.14e-06	1.73e-05

tai-screen-luciferase-reg-snw-4904 subnetwork

Genes (6)

Gene Symbol	Entrez Gene ID	Frequency	tai-screen-luciferase gene score	Best subnetwork score	Degree	Transcription factor	List-Gonzales GI	Tai-Hits
MRPS12	6183	13	-5.421	5.516	307	TF	Yes	-
[ YBX1 ]	4904	6	-3.033	5.516	120	TF	-	-
COPA	1314	25	-9.395	5.672	170	TF	Yes	Yes
SERBP1	26135	10	-4.612	5.516	43	-	-	Yes
CKAP5	9793	20	-7.214	5.672	89	TF	Yes	Yes
CDC5L	988	15	-3.419	5.672	155	TF	-	-

Interactions (5)

Gene Symbol 1	Entrez Gene ID 1	Gene Symbol 2	Entrez Gene ID 2	Type	Direction	Origin databases / Sources
CDC5L	988	CKAP5	9793	pd	<>	reg.ITFP.txt: no annot
YBX1	4904	SERBP1	26135	pd	>	reg.ITFP.txt: no annot
CDC5L	988	COPA	1314	pd	<>	reg.ITFP.txt: no annot
CDC5L	988	YBX1	4904	pd	<>	reg.ITFP.txt: no annot
YBX1	4904	MRPS12	6183	pd	<>	reg.ITFP.txt: no annot

Related GO terms (70)

Accession number	Name	Hypergeometric test	Corrected p-value	Enrichment ratio	Occurrence in subnetwork	Occurrences in all snw genes	Occurrences in all int/reg genes
GO:0044822	poly(A) RNA binding	5.84e-04	1.00e+00	3.026	4	25	799
GO:0071987	WD40-repeat domain binding	6.14e-04	1.00e+00	10.668	1	1	1
GO:0030951	establishment or maintenance of microtubule cytoskeleton polarity	1.23e-03	1.00e+00	9.668	1	1	2
GO:0072422	signal transduction involved in DNA damage checkpoint	1.23e-03	1.00e+00	9.668	1	1	2
GO:0051154	negative regulation of striated muscle cell differentiation	1.84e-03	1.00e+00	9.083	1	1	3
GO:0050658	RNA transport	2.46e-03	1.00e+00	8.668	1	1	4
GO:0030157	pancreatic juice secretion	2.46e-03	1.00e+00	8.668	1	1	4
GO:0000398	mRNA splicing, via spliceosome	2.47e-03	1.00e+00	4.668	2	2	128
GO:0016020	membrane	2.83e-03	1.00e+00	2.431	4	25	1207
GO:0000974	Prp19 complex	3.07e-03	1.00e+00	8.347	1	1	5
GO:0071204	histone pre-mRNA 3'end processing complex	3.07e-03	1.00e+00	8.347	1	1	5
GO:0000930	gamma-tubulin complex	3.07e-03	1.00e+00	8.347	1	1	5
GO:0070934	CRD-mediated mRNA stabilization	3.07e-03	1.00e+00	8.347	1	1	5
GO:0070937	CRD-mediated mRNA stability complex	3.68e-03	1.00e+00	8.083	1	1	6
GO:0030126	COPI vesicle coat	4.29e-03	1.00e+00	7.861	1	1	7
GO:0005662	DNA replication factor A complex	4.91e-03	1.00e+00	7.668	1	1	8
GO:0007051	spindle organization	6.13e-03	1.00e+00	7.347	1	1	10
GO:0043488	regulation of mRNA stability	6.13e-03	1.00e+00	7.347	1	1	10
GO:0015935	small ribosomal subunit	7.35e-03	1.00e+00	7.083	1	4	12
GO:0051297	centrosome organization	7.35e-03	1.00e+00	7.083	1	1	12
GO:0048205	COPI coating of Golgi vesicle	7.35e-03	1.00e+00	7.083	1	1	12
GO:0035371	microtubule plus-end	7.96e-03	1.00e+00	6.968	1	1	13
GO:0005689	U12-type spliceosomal complex	1.04e-02	1.00e+00	6.581	1	2	17
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	1.04e-02	1.00e+00	6.581	1	1	17
GO:0005761	mitochondrial ribosome	1.22e-02	1.00e+00	6.347	1	1	20
GO:0051781	positive regulation of cell division	1.34e-02	1.00e+00	6.209	1	1	22
GO:0003730	mRNA 3'-UTR binding	1.53e-02	1.00e+00	6.025	1	1	25
GO:0010494	cytoplasmic stress granule	1.59e-02	1.00e+00	5.968	1	2	26
GO:0003697	single-stranded DNA binding	3.45e-02	1.00e+00	4.836	1	3	57
GO:0005179	hormone activity	3.63e-02	1.00e+00	4.762	1	1	60
GO:0071013	catalytic step 2 spliceosome	3.69e-02	1.00e+00	4.738	1	1	61
GO:0000922	spindle pole	4.11e-02	1.00e+00	4.581	1	3	68
GO:0015630	microtubule cytoskeleton	4.52e-02	1.00e+00	4.440	1	2	75
GO:0005737	cytoplasm	4.89e-02	1.00e+00	1.306	4	39	2633
GO:0030529	ribonucleoprotein complex	4.94e-02	1.00e+00	4.311	1	3	82
GO:0003690	double-stranded DNA binding	4.99e-02	1.00e+00	4.293	1	1	83
GO:0005515	protein binding	5.22e-02	1.00e+00	0.981	5	50	4124
GO:0006886	intracellular protein transport	5.35e-02	1.00e+00	4.193	1	1	89
GO:0061024	membrane organization	5.35e-02	1.00e+00	4.193	1	3	89
GO:0000086	G2/M transition of mitotic cell cycle	5.82e-02	1.00e+00	4.069	1	3	97
GO:0005198	structural molecule activity	6.05e-02	1.00e+00	4.010	1	1	101
GO:0070062	extracellular vesicular exosome	6.36e-02	1.00e+00	1.573	3	28	1641
GO:0003735	structural constituent of ribosome	6.51e-02	1.00e+00	3.900	1	8	109
GO:0006355	regulation of transcription, DNA-templated	6.59e-02	1.00e+00	2.187	2	9	715
GO:0042981	regulation of apoptotic process	6.69e-02	1.00e+00	3.861	1	4	112
GO:0016607	nuclear speck	7.27e-02	1.00e+00	3.738	1	2	122
GO:0031965	nuclear membrane	7.73e-02	1.00e+00	3.646	1	2	130
GO:0001701	in utero embryonic development	9.10e-02	1.00e+00	3.402	1	2	154
GO:0007067	mitotic nuclear division	9.72e-02	1.00e+00	3.302	1	5	165
GO:0008380	RNA splicing	9.72e-02	1.00e+00	3.302	1	4	165
GO:0006412	translation	1.05e-01	1.00e+00	3.193	1	13	178
GO:0003677	DNA binding	1.08e-01	1.00e+00	1.781	2	12	947
GO:0043234	protein complex	1.22e-01	1.00e+00	2.954	1	8	210
GO:0005813	centrosome	1.26e-01	1.00e+00	2.907	1	6	217
GO:0043231	intracellular membrane-bounded organelle	1.27e-01	1.00e+00	2.900	1	1	218
GO:0003723	RNA binding	1.43e-01	1.00e+00	2.720	1	6	247
GO:0003682	chromatin binding	1.45e-01	1.00e+00	2.691	1	3	252
GO:0000278	mitotic cell cycle	1.78e-01	1.00e+00	2.374	1	9	314
GO:0006366	transcription from RNA polymerase II promoter	1.92e-01	1.00e+00	2.255	1	2	341
GO:0048471	perinuclear region of cytoplasm	1.94e-01	1.00e+00	2.242	1	7	344
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	2.49e-01	1.00e+00	1.836	1	6	456
GO:0010467	gene expression	2.87e-01	1.00e+00	1.605	1	17	535
GO:0005829	cytosol	3.03e-01	1.00e+00	0.865	2	33	1787
GO:0003700	sequence-specific DNA binding transcription factor activity	3.08e-01	1.00e+00	1.484	1	9	582
GO:0005634	nucleus	3.18e-01	1.00e+00	0.589	3	40	3246
GO:0005615	extracellular space	3.39e-01	1.00e+00	1.322	1	2	651
GO:0005654	nucleoplasm	4.31e-01	1.00e+00	0.894	1	16	876
GO:0006351	transcription, DNA-templated	5.04e-01	1.00e+00	0.597	1	15	1076
GO:0005730	nucleolus	5.50e-01	1.00e+00	0.419	1	21	1217
GO:0005886	plasma membrane	7.02e-01	1.00e+00	-0.132	1	13	1784

Tai-Luciferase

reg-snw-4904

Statistics

Genes (6)

Interactions (5)

Related GO terms (70)